JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBMX_chrX_136868461_136885725	0/0	t0008	837	2	0	0	2	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0009	837	2	0	0	2	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0010	837	1	0	0	0	0	1	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0011	836	1	0	1	0	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0012	837	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0013	837	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0014	838	1	0	0	0	0	1	copy fasta	RBMX	chrX	136868461	136885725
RBMY1A1_chrY_21529879_21554326	0/0	t0001	431	56	12	10	30	2	2	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	t0002	432	1	0	0	0	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	t0003	433	1	0	0	0	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	t0004	432	1	0	0	0	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	t0005	432	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	t0006	432	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	t0007	432	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	t0008	435	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	t0009	431	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1B_chrY_21506338_21530786	0/0	t0001	431	2	0	0	2	0	0	copy fasta	RBMY1B	chrY	21506338	21530786
RBMY1B_chrY_21506338_21530786	0/0	t0002	431	1	0	0	1	0	0	copy fasta	RBMY1B	chrY	21506338	21530786
RBMY1E_chrY_21898622_21923032	0/0	t0001	392	1	0	0	1	0	0	copy fasta	RBMY1E	chrY	21898622	21923032
RBMY1F_chrY_22163542_22187923	0/0	t0001	372	13	1	8	2	2	0	copy fasta	RBMY1F	chrY	22163542	22187923
RBMY1J_chrY_22398410_22422881	0/0	t0001	457	1	0	0	1	0	0	copy fasta	RBMY1J	chrY	22398410	22422881
RBP1_chr3_139512438_139544742	1/1	t0001	214	348	81	77	132	12	44	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	t0002	209	4	3	1	0	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	t0003	214	4	0	0	4	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP2_chr3_139447884_139481516	1/1	t0001	290	265	73	62	80	12	36	copy fasta	RBP2	chr3	139447884	139481516
RBP2_chr3_139447884_139481516	0/0	t0002	290	1	1	0	0	0	0	copy fasta	RBP2	chr3	139447884	139481516
RBP3_chr10_47343363_47362881	1/1	t0001	547	367	95	66	159	16	29	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	t0002	547	46	3	4	29	0	10	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	t0003	547	2	0	2	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	t0004	547	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	t0005	498	1	0	0	0	0	1	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	t0006	547	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP4_chr10_93586694_93606235	1/0	t0001	465	304	52	56	157	11	27	copy fasta	RBP4	chr10	93586694	93606235
RBP4_chr10_93586694_93606235	0/1	t0002	465	110	39	21	21	7	21	copy fasta	RBP4	chr10	93586694	93606235
RBP4_chr10_93586694_93606235	0/0	t0003	464	6	6	0	0	0	0	copy fasta	RBP4	chr10	93586694	93606235
RBP4_chr10_93586694_93606235	0/0	t0004	465	2	1	1	0	0	0	copy fasta	RBP4	chr10	93586694	93606235
RBP4_chr10_93586694_93606235	0/0	t0005	465	1	1	0	0	0	0	copy fasta	RBP4	chr10	93586694	93606235
RBP4_chr10_93586694_93606235	0/0	t0006	465	1	1	0	0	0	0	copy fasta	RBP4	chr10	93586694	93606235
RBP5_chr12_7118686_7133889	1/1	t0001	550	346	67	66	153	13	45	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	t0002	550	55	2	6	40	3	4	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	t0003	550	11	11	0	0	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	t0004	550	7	7	0	0	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	t0005	550	1	0	0	0	0	1	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	t0006	550	1	0	0	1	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	t0007	550	1	1	0	0	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	t0008	550	1	0	0	1	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	t0009	550	1	0	0	1	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP7_chr1_9992228_10021021	1/1	t0001	221	368	90	62	156	15	43	copy fasta	RBP7	chr1	9992228	10021021
RBP7_chr1_9992228_10021021	0/0	t0002	221	5	2	2	0	1	0	copy fasta	RBP7	chr1	9992228	10021021
RBP7_chr1_9992228_10021021	0/0	t0003	221	2	1	0	0	0	1	copy fasta	RBP7	chr1	9992228	10021021