JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XAF1_chr17_6751046_6780647	0/0	t0004	2510	19	15	1	3	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0005	2511	13	5	0	8	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0006	2512	9	0	0	9	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0007	2512	6	1	5	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0008	2512	5	5	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0009	2513	4	2	0	2	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/1	t0010	2512	4	0	1	0	1	1	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0011	2512	4	0	0	4	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0012	2512	3	0	0	2	0	1	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0013	2510	3	3	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0014	2512	3	0	0	3	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0015	2512	3	3	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0016	2512	3	2	1	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0017	2512	2	2	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0018	2512	2	2	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0019	2513	2	0	0	0	0	2	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0020	2511	2	0	0	2	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0021	2512	2	2	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0022	2512	2	2	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0023	2510	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0024	2512	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0025	2512	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0026	2512	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0027	2513	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0028	2511	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0029	2510	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0030	2512	1	0	0	0	0	1	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0031	2512	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0032	2512	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0033	2512	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0034	2512	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0035	2512	1	0	1	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0036	2512	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAGE1A_chrX_52490808_52505812	0/0	t0001	237	238	65	53	88	10	22	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	t0002	237	1	1	0	0	0	0	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	t0003	237	1	0	0	1	0	0	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	t0004	237	1	1	0	0	0	0	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1B_chrX_52507077_52522063	0/0	t0001	219	240	63	46	94	11	26	copy fasta	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	t0002	219	1	0	0	1	0	0	copy fasta	XAGE1B	chrX	52507077	52522063
XAGE2_chrX_52364021_52380680	1/1	t0001	292	246	72	44	95	7	26	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	t0002	292	4	4	0	0	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	t0003	291	2	0	2	0	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	t0004	291	1	0	0	1	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE3_chrX_52857528_52873083	1/1	t0001	177	171	72	21	63	5	8	copy fasta	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	t0002	177	153	6	29	88	6	24	copy fasta	XAGE3	chrX	52857528	52873083
XAGE5_chrX_52806287_52823301	1/1	t0001	395	257	63	45	112	11	24	copy fasta	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	t0002	395	5	2	3	0	0	0	copy fasta	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	t0003	395	1	0	0	1	0	0	copy fasta	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	t0004	395	1	1	0	0	0	0	copy fasta	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	t0005	396	1	0	0	1	0	0	copy fasta	XAGE5	chrX	52806287	52823301