Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
ARMH1 143 32 75 43 0 0 0.554 0.124 0.291 0.167 0.000 0.000 chr1 44669714 44730591
ARMH2 221 81 36 23 0 0 0.857 0.314 0.140 0.089 0.000 0.000 chr6 24792335 24803917
ARMH3 130 45 94 45 0 0 0.504 0.174 0.364 0.174 0.000 0.000 chr10 101840599 102061173
ARMH4 128 32 78 45 0 0 0.496 0.124 0.302 0.174 0.000 0.000 chr14 57995761 58157213
ARMS2 211 74 45 30 1 1 0.818 0.287 0.174 0.116 0.004 0.004 chr10 122449653 122462352
ARMT1 208 79 47 24 0 0 0.806 0.306 0.182 0.093 0.000 0.000 chr6 151447466 151475101
ARNT2 133 35 70 44 0 0 0.516 0.136 0.271 0.171 0.000 0.000 chr15 80399382 80602933
ARNT 162 55 80 42 0 0 0.628 0.213 0.310 0.163 0.000 0.000 chr1 150804713 150881599
ARPC1A 157 48 87 48 0 0 0.609 0.186 0.337 0.186 0.000 0.000 chr7 99320898 99371262
ARPC1B 169 56 84 44 0 0 0.655 0.217 0.326 0.171 0.000 0.000 chr7 99369730 99399816
ARPC2 165 51 81 46 0 0 0.640 0.198 0.314 0.178 0.000 0.000 chr2 218212189 218259348
ARPC3 166 47 89 55 0 0 0.643 0.182 0.345 0.213 0.000 0.000 chr12 110429823 110455337
ARPC4 222 83 30 17 0 0 0.860 0.322 0.116 0.066 0.000 0.000 chr3 9788082 9812101
ARPC5L 201 69 52 31 1 1 0.779 0.267 0.202 0.120 0.004 0.004 chr9 124857130 124882733
ARPC5 181 57 74 45 0 0 0.702 0.221 0.287 0.174 0.000 0.000 chr1 183615846 183640783
ARPIN 206 64 45 36 0 0 0.798 0.248 0.174 0.140 0.000 0.000 chr15 89890006 89917952
ARPP19 210 77 46 27 0 0 0.814 0.298 0.178 0.105 0.000 0.000 chr15 52542045 52574030
ARPP21 132 34 84 45 0 0 0.512 0.132 0.326 0.174 0.000 0.000 chr3 35634525 35799486
ARR3 94 27 160 74 1 1 0.364 0.105 0.620 0.287 0.004 0.004 chrX 70263334 70286840
ARRB1 159 43 67 41 0 0 0.616 0.167 0.260 0.159 0.000 0.000 chr11 75255122 75356661
ARRB2 215 74 40 29 0 0 0.833 0.287 0.155 0.112 0.000 0.000 chr17 4705632 4726497
ARRDC1 168 44 84 59 0 0 0.651 0.171 0.326 0.229 0.000 0.000 chr9 137600686 137620360
ARRDC2 206 66 47 34 0 0 0.798 0.256 0.182 0.132 0.000 0.000 chr19 18003170 18019102
ARRDC3 200 74 56 30 0 0 0.775 0.287 0.217 0.116 0.000 0.000 chr5 91363631 91388317
ARRDC4 210 77 44 25 0 0 0.814 0.298 0.171 0.097 0.000 0.000 chr15 97955703 97978833
ARRDC5 205 64 45 36 0 0 0.795 0.248 0.174 0.140 0.000 0.000 chr19 4885437 4907896
ARSA 229 84 27 20 1 1 0.888 0.326 0.105 0.078 0.004 0.004 chr22 50617754 50633152
ARSB 179 55 44 30 0 0 0.694 0.213 0.171 0.116 0.000 0.000 chr5 78772209 78990310
ARSD 112 39 139 59 0 0 0.434 0.151 0.539 0.229 0.000 0.000 chrX 2898972 2934339
ARSF 37 6 180 76 0 0 0.143 0.023 0.698 0.295 0.000 0.000 chrX 3036471 3117727
ARSG 151 36 62 42 0 0 0.585 0.140 0.240 0.163 0.000 0.000 chr17 68286495 68425814
ARSH 66 15 163 75 0 0 0.256 0.058 0.632 0.291 0.000 0.000 chrX 3001546 3039111
ARSI 227 82 28 20 1 1 0.880 0.318 0.109 0.078 0.004 0.004 chr5 150291343 150307905
ARSJ 174 61 56 28 0 0 0.674 0.236 0.217 0.109 0.000 0.000 chr4 113895284 113984647
ARSK 167 62 82 39 0 0 0.647 0.240 0.318 0.151 0.000 0.000 chr5 95550101 95610102
ARSL 100 32 145 64 0 0 0.388 0.124 0.562 0.248 0.000 0.000 chrX 2929521 2969341
ART1 196 70 52 28 0 0 0.760 0.271 0.202 0.109 0.000 0.000 chr11 3640128 3669416
ART3 195 69 55 33 0 0 0.756 0.267 0.213 0.128 0.000 0.000 chr4 76069709 76117786
ART4 189 54 63 46 1 0 0.733 0.209 0.244 0.178 0.004 0.000 chr12 14820569 14848526
ART5 226 85 28 16 1 1 0.876 0.329 0.109 0.062 0.004 0.004 chr11 3633512 3646992
ARTN 196 75 59 28 0 0 0.760 0.291 0.229 0.109 0.000 0.000 chr1 43928801 43942240
ARV1 200 73 55 29 0 0 0.775 0.283 0.213 0.112 0.000 0.000 chr1 230974094 231005733
ARVCF 186 58 52 36 0 0 0.721 0.225 0.202 0.140 0.000 0.000 chr22 19964896 20021823
ARX 86 20 163 77 0 0 0.333 0.078 0.632 0.298 0.000 0.000 chrX 24998694 25020965
AR 32 0 211 96 0 0 0.124 0.000 0.818 0.372 0.000 0.000 chrX 67539021 67735619
AS3MT 180 63 64 33 0 0 0.698 0.244 0.248 0.128 0.000 0.000 chr10 102864470 102906899
ASAH1 209 74 37 24 0 0 0.810 0.287 0.143 0.093 0.000 0.000 chr8 18050992 18089107
ASAH2B 206 80 45 20 0 0 0.798 0.310 0.174 0.078 0.000 0.000 chr10 50734936 50764255
ASAH2 203 73 46 26 0 0 0.787 0.283 0.178 0.101 0.000 0.000 chr10 50179861 50256516
ASAP1 153 44 69 38 0 0 0.593 0.171 0.267 0.147 0.000 0.000 chr8 130047104 130448674