Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view RORA 59 2 92 53 0 0 0.229 0.008 0.357 0.205 0.000 0.000 chr15 60483284 61234302
view RORB 112 30 90 49 0 0 0.434 0.116 0.349 0.190 0.000 0.000 chr9 74492335 74698177
view RORC 214 75 35 23 0 0 0.829 0.291 0.136 0.089 0.000 0.000 chr1 151801071 151836802
view ROS1 160 49 54 32 0 0 0.620 0.190 0.209 0.124 0.000 0.000 chr6 117282353 117430942
view RP1L1 206 65 30 22 0 0 0.798 0.252 0.116 0.085 0.000 0.000 chr8 10601349 10660143
view RP1 214 81 39 20 0 0 0.829 0.314 0.151 0.078 0.000 0.000 chr8 54611096 54635834
view RP2 73 19 169 73 0 0 0.283 0.074 0.655 0.283 0.000 0.000 chrX 46832043 46887358
view RP9 221 83 34 20 0 0 0.857 0.322 0.132 0.078 0.000 0.000 chr7 33089797 33114404
view RPA1 200 70 42 25 0 0 0.775 0.271 0.163 0.097 0.000 0.000 chr17 1825005 1905082
view RPA2 181 47 56 38 0 0 0.702 0.182 0.217 0.147 0.000 0.000 chr1 27886524 27919575
view RPA3 153 42 78 51 0 0 0.593 0.163 0.302 0.198 0.000 0.000 chr7 7631518 7723607
view RPA4 96 30 157 73 0 0 0.372 0.116 0.609 0.283 0.000 0.000 chrX 96878908 96890467
view RPAIN 199 62 55 39 0 0 0.771 0.240 0.213 0.151 0.000 0.000 chr17 5415182 5437877
view RPAP1 206 74 44 27 0 0 0.798 0.287 0.171 0.105 0.000 0.000 chr15 41512176 41549257
view RPAP2 95 9 144 85 0 0 0.368 0.035 0.558 0.329 0.000 0.000 chr1 92294059 92407056
view RPAP3 206 77 48 25 0 0 0.798 0.298 0.186 0.097 0.000 0.000 chr12 47656249 47711030
view RPE65 227 88 28 16 0 0 0.880 0.341 0.109 0.062 0.000 0.000 chr1 68423822 68454954
view RPEL1 187 59 57 34 0 0 0.725 0.229 0.221 0.132 0.000 0.000 chr10 103240887 103253016
view RPE 184 65 65 33 0 0 0.713 0.252 0.252 0.128 0.000 0.000 chr2 209997638 210027260
view RPF1 174 55 75 46 0 0 0.674 0.213 0.291 0.178 0.000 0.000 chr1 84474266 84503352
view RPF2 179 61 58 32 0 0 0.694 0.236 0.225 0.124 0.000 0.000 chr6 110977038 111033263
view RPGRIP1L 181 66 70 36 0 0 0.702 0.256 0.271 0.140 0.000 0.000 chr16 53593153 53708859
view RPGRIP1 165 45 67 44 0 0 0.640 0.174 0.260 0.171 0.000 0.000 chr14 21275083 21356301
view RPGR 87 23 161 72 0 0 0.337 0.089 0.624 0.279 0.000 0.000 chrX 38279408 38332509
view RPH3AL 66 16 116 38 0 0 0.256 0.062 0.450 0.147 0.000 0.000 chr17 207389 357807
view RPH3A 132 36 82 47 0 0 0.512 0.140 0.318 0.182 0.000 0.000 chr12 112786748 112903881
view RPIA 183 54 59 37 0 0 0.709 0.209 0.229 0.143 0.000 0.000 chr2 88686673 88755929
view RPL10A 202 76 53 27 0 0 0.783 0.295 0.205 0.105 0.000 0.000 chr6 35463401 35475780
view RPL10L 192 66 63 38 2 0 0.744 0.256 0.244 0.147 0.008 0.000 chr14 46646010 46656781
view RPL10 77 17 166 75 0 0 0.298 0.066 0.643 0.291 0.000 0.000 chrX 154393377 154407332
view RPL11 193 63 60 38 0 0 0.748 0.244 0.233 0.147 0.000 0.000 chr1 23686806 23701835
view RPL12 199 70 57 33 0 0 0.771 0.271 0.221 0.128 0.000 0.000 chr9 127442674 127456406
view RPL13A 168 44 81 54 0 0 0.651 0.171 0.314 0.209 0.000 0.000 chr19 49482608 49497308
view RPL13 192 58 60 43 0 0 0.744 0.225 0.233 0.167 0.000 0.000 chr16 89555682 89569542
view RPL14 208 81 48 24 0 0 0.806 0.314 0.186 0.093 0.000 0.000 chr3 40452339 40473587
view RPL15 226 87 30 16 0 0 0.876 0.337 0.116 0.062 0.000 0.000 chr3 23912132 23925989
view RPL17 222 87 34 16 0 0 0.860 0.337 0.132 0.062 0.000 0.000 chr18 49483481 49497465
view RPL18A 205 66 51 37 0 0 0.795 0.256 0.198 0.143 0.000 0.000 chr19 17854910 17868319
view RPL18 190 57 66 46 0 0 0.736 0.221 0.256 0.178 0.000 0.000 chr19 48610331 48624178
view RPL19 198 62 55 41 0 0 0.767 0.240 0.213 0.159 0.000 0.000 chr17 39195283 39209732
view RPL21 212 79 45 25 0 0 0.822 0.306 0.174 0.097 0.000 0.000 chr13 27246558 27261568
view RPL22L1 228 89 29 15 0 0 0.884 0.345 0.112 0.058 0.000 0.000 chr3 170859875 170875195
view RPL22 185 53 60 41 0 0 0.717 0.205 0.233 0.159 0.000 0.000 chr1 6180020 6204595
view RPL23A 178 53 73 46 1 0 0.690 0.205 0.283 0.178 0.004 0.000 chr17 28714985 28729359
view RPL23 208 76 49 28 0 0 0.806 0.295 0.190 0.109 0.000 0.000 chr17 38842860 38858721
view RPL24 221 90 36 14 1 1 0.857 0.349 0.140 0.054 0.004 0.004 chr3 101676091 101691718
view RPL26L1 192 59 57 38 0 0 0.744 0.229 0.221 0.147 0.000 0.000 chr5 172954424 172974771
view RPL26 210 75 43 26 1 0 0.814 0.291 0.167 0.101 0.004 0.000 chr17 8372516 8388193
view RPL27A 222 83 35 21 1 1 0.860 0.322 0.136 0.081 0.004 0.004 chr11 8677792 8694872
view RPL27 177 50 79 53 0 0 0.686 0.194 0.306 0.205 0.000 0.000 chr17 42993419 43007959