Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TM2D3 210 71 47 33 0 0 0.814 0.275 0.182 0.128 0.000 0.000 chr15 101636848 101657381
view TM4SF18 220 86 37 18 0 0 0.853 0.333 0.143 0.070 0.000 0.000 chr3 149313498 149338636
view TM4SF19 184 53 57 37 0 0 0.713 0.205 0.221 0.143 0.000 0.000 chr3 196318547 196343388
view TM4SF1 216 72 38 30 1 1 0.837 0.279 0.147 0.116 0.004 0.004 chr3 149364022 149382649
view TM4SF20 234 94 22 10 0 0 0.907 0.364 0.085 0.039 0.000 0.000 chr2 227357038 227384306
view TM4SF4 209 75 42 24 1 1 0.810 0.291 0.163 0.093 0.004 0.004 chr3 149469697 149508394
view TM4SF5 226 88 27 15 3 0 0.876 0.341 0.105 0.058 0.012 0.000 chr17 4766886 4788211
view TM6SF1 144 34 96 57 0 0 0.558 0.132 0.372 0.221 0.000 0.000 chr15 83102645 83142408
view TM6SF2 197 59 52 37 0 0 0.764 0.229 0.202 0.143 0.000 0.000 chr19 19259366 19278301
view TM7SF2 189 57 67 46 0 0 0.733 0.221 0.260 0.178 0.000 0.000 chr11 65106872 65121230
view TM7SF3 214 82 33 19 0 0 0.829 0.318 0.128 0.074 0.000 0.000 chr12 26966579 27019384
view TM9SF1 216 78 37 22 1 1 0.837 0.302 0.143 0.085 0.004 0.004 chr14 24184149 24200441
view TM9SF2 165 51 79 44 0 0 0.640 0.198 0.306 0.171 0.000 0.000 chr13 99496472 99569048
view TM9SF3 173 54 68 45 0 0 0.671 0.209 0.264 0.174 0.000 0.000 chr10 96513110 96592012
view TM9SF4 148 43 91 49 0 0 0.574 0.167 0.353 0.190 0.000 0.000 chr20 32104714 32172256
view TMA16 210 82 40 18 0 0 0.814 0.318 0.155 0.070 0.000 0.000 chr4 163489690 163525539
view TMA7B 213 72 43 31 0 0 0.826 0.279 0.167 0.120 0.000 0.000 chr22 39955397 39969905
view TMA7 195 70 63 35 0 0 0.756 0.271 0.244 0.136 0.000 0.000 chr3 48435257 48449208
view TMBIM1 177 56 76 45 0 0 0.686 0.217 0.295 0.174 0.000 0.000 chr2 218269197 218297503
view TMBIM4 175 59 72 37 0 0 0.678 0.229 0.279 0.143 0.000 0.000 chr12 66130846 66174996
view TMBIM6 151 47 95 50 0 0 0.585 0.182 0.368 0.194 0.000 0.000 chr12 49736557 49769934
view TMC1 90 20 116 64 0 0 0.349 0.078 0.450 0.248 0.000 0.000 chr9 72516608 72843297
view TMC2 171 57 43 26 0 0 0.663 0.221 0.167 0.101 0.000 0.000 chr20 2531573 2648580
view TMC3 194 75 53 24 0 0 0.752 0.291 0.205 0.093 0.000 0.000 chr15 81326088 81379213
view TMC4 203 59 49 42 0 0 0.787 0.229 0.190 0.163 0.000 0.000 chr19 54155108 54178160
view TMC5 167 51 71 42 0 0 0.647 0.198 0.275 0.163 0.000 0.000 chr16 19412883 19504113
view TMC6 221 75 30 24 0 0 0.857 0.291 0.116 0.093 0.000 0.000 chr17 78102397 78133755
view TMC7 140 29 98 64 0 0 0.543 0.112 0.380 0.248 0.000 0.000 chr16 18978934 19068942
view TMC8 226 77 28 24 0 0 0.876 0.298 0.109 0.093 0.000 0.000 chr17 78125771 78147968
view TMCC1 128 36 95 48 0 0 0.496 0.140 0.368 0.186 0.000 0.000 chr3 129642792 129898711
view TMCC2 185 61 65 40 0 0 0.717 0.236 0.252 0.155 0.000 0.000 chr1 205222946 205278343
view TMCC3 188 56 43 27 0 0 0.729 0.217 0.167 0.105 0.000 0.000 chr12 94562122 94655557
view TMCO1 186 58 62 40 0 0 0.721 0.225 0.240 0.155 0.000 0.000 chr1 165721795 165773868
view TMCO2 212 78 42 23 1 1 0.822 0.302 0.163 0.089 0.004 0.004 chr1 40242937 40256684
view TMCO3 183 58 64 40 0 0 0.709 0.225 0.248 0.155 0.000 0.000 chr13 113486021 113555229
view TMCO4 155 41 64 41 0 0 0.601 0.159 0.248 0.159 0.000 0.000 chr1 19677240 19804916
view TMCO5A 179 58 74 44 0 0 0.694 0.225 0.287 0.171 0.000 0.000 chr15 37929640 37956422
view TMCO6 202 72 54 32 1 0 0.783 0.279 0.209 0.124 0.004 0.000 chr5 140634451 140650404
view TMDD1 196 63 61 41 0 0 0.760 0.244 0.236 0.159 0.000 0.000 chr12 51808921 51819925
view TMED10 130 32 102 59 0 0 0.504 0.124 0.395 0.229 0.000 0.000 chr14 75126469 75181612
view TMED1 200 77 54 26 0 0 0.775 0.298 0.209 0.101 0.000 0.000 chr19 10827067 10841212
view TMED2 141 23 107 73 0 0 0.547 0.089 0.415 0.283 0.000 0.000 chr12 123579552 123603582
view TMED3 221 75 32 26 1 0 0.857 0.291 0.124 0.101 0.004 0.000 chr15 79306112 79327840
view TMED4 200 63 56 40 0 0 0.775 0.244 0.217 0.155 0.000 0.000 chr7 44572894 44587231
view TMED5 171 52 79 49 1 1 0.663 0.202 0.306 0.190 0.004 0.004 chr1 93144742 93185413
view TMED6 204 68 46 31 0 0 0.791 0.264 0.178 0.120 0.000 0.000 chr16 69338250 69356786
view TMED7 192 72 60 31 0 0 0.744 0.279 0.233 0.120 0.000 0.000 chr5 115608210 115631036
view TMED8 163 47 78 46 0 0 0.632 0.182 0.302 0.178 0.000 0.000 chr14 77330029 77382094
view TMED9 218 76 34 24 1 1 0.845 0.295 0.132 0.093 0.004 0.004 chr5 177587203 177602242
view TMEFF1 120 28 96 59 0 0 0.465 0.109 0.372 0.229 0.000 0.000 chr9 100468149 100582636