Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TIPARP 175 58 74 41 0 0 0.678 0.225 0.287 0.159 0.000 0.000 chr3 156669590 156711770
view TIPIN 207 72 49 31 0 0 0.802 0.279 0.190 0.120 0.000 0.000 chr15 66331191 66361685
view TIPRL 192 72 55 26 0 0 0.744 0.279 0.213 0.101 0.000 0.000 chr1 168173962 168207109
view TIRAP 181 57 73 47 1 0 0.702 0.221 0.283 0.182 0.004 0.000 chr11 126278093 126299933
view TJAP1 143 29 94 63 0 0 0.554 0.112 0.364 0.244 0.000 0.000 chr6 43472570 43511554
view TJP1 130 30 99 64 0 0 0.504 0.116 0.384 0.248 0.000 0.000 chr15 29695152 29827468
view TJP2 177 59 61 33 0 0 0.686 0.229 0.236 0.128 0.000 0.000 chr9 69169277 69260208
view TJP3 198 61 47 32 0 0 0.767 0.236 0.182 0.124 0.000 0.000 chr19 3703384 3755813
view TK1 222 74 33 28 0 0 0.860 0.287 0.128 0.109 0.000 0.000 chr17 78169091 78192052
view TK2 149 45 85 49 0 0 0.578 0.174 0.329 0.190 0.000 0.000 chr16 66503003 66555122
view TKFC 120 26 128 74 0 0 0.465 0.101 0.496 0.287 0.000 0.000 chr11 61328228 61354242
view TKTL1 73 14 161 72 0 0 0.283 0.054 0.624 0.279 0.000 0.000 chrX 154290795 154335350
view TKTL2 217 83 38 20 0 0 0.841 0.322 0.147 0.078 0.000 0.000 chr4 163466095 163478754
view TKT 188 60 55 31 0 0 0.729 0.233 0.213 0.120 0.000 0.000 chr3 53219712 53261022
view TLCD1 177 54 74 47 0 0 0.686 0.209 0.287 0.182 0.000 0.000 chr17 28719348 28731233
view TLCD2 225 82 31 21 0 0 0.872 0.318 0.120 0.081 0.000 0.000 chr17 1697816 1715377
view TLCD3A 197 76 52 25 0 0 0.764 0.295 0.202 0.097 0.000 0.000 chr17 727596 747968
view TLCD3B 174 53 83 51 0 0 0.674 0.205 0.322 0.198 0.000 0.000 chr16 30019427 30036271
view TLCD4 188 68 46 24 0 0 0.729 0.264 0.178 0.093 0.000 0.000 chr1 95112355 95202607
view TLCD5 215 71 41 33 1 0 0.833 0.275 0.159 0.128 0.004 0.000 chr11 120320299 120338686
view TLDC2 191 62 54 32 1 1 0.740 0.240 0.209 0.124 0.004 0.004 chr20 36871138 36899235
view TLE1 177 53 58 39 0 0 0.686 0.205 0.225 0.151 0.000 0.000 chr9 81578683 81694547
view TLE2 201 60 43 31 0 0 0.779 0.233 0.167 0.120 0.000 0.000 chr19 2992644 3034280
view TLE3 191 60 48 29 0 0 0.740 0.233 0.186 0.112 0.000 0.000 chr15 70042790 70102917
view TLE4 128 36 97 57 0 0 0.496 0.140 0.376 0.221 0.000 0.000 chr9 79566965 79731882
view TLE5 204 62 45 35 0 0 0.791 0.240 0.174 0.136 0.000 0.000 chr19 3047910 3067495
view TLE6 204 64 45 32 0 0 0.791 0.248 0.174 0.124 0.000 0.000 chr19 2972564 3000179
view TLE7 205 71 50 32 1 0 0.795 0.275 0.194 0.124 0.004 0.000 chr16 71424980 71447054
view TLK1 132 34 98 62 0 0 0.512 0.132 0.380 0.240 0.000 0.000 chr2 170985823 171165893
view TLK2 145 39 83 46 0 0 0.562 0.151 0.322 0.178 0.000 0.000 chr17 62473825 62620481
view TLL1 124 35 80 42 0 0 0.481 0.136 0.310 0.163 0.000 0.000 chr4 165868237 166109457
view TLL2 127 26 84 51 0 0 0.492 0.101 0.326 0.198 0.000 0.000 chr10 96359608 96518926
view TLN1 185 59 61 38 0 0 0.717 0.229 0.236 0.147 0.000 0.000 chr9 35691948 35737195
view TLN2 71 5 84 52 0 0 0.275 0.019 0.326 0.202 0.000 0.000 chr15 62385550 62849631
view TLNRD1 178 57 77 47 1 0 0.690 0.221 0.298 0.182 0.004 0.000 chr15 80995923 81010788
view TLR10 218 78 38 25 0 0 0.845 0.302 0.147 0.097 0.000 0.000 chr4 38767238 38787990
view TLR1 222 81 32 21 1 0 0.860 0.314 0.124 0.081 0.004 0.000 chr4 38791255 38809791
view TLR2 215 82 38 19 0 0 0.833 0.318 0.147 0.074 0.000 0.000 chr4 153679280 153711260
view TLR3 224 83 30 20 0 0 0.868 0.322 0.116 0.078 0.000 0.000 chr4 186064156 186093073
view TLR4 196 59 55 41 0 0 0.760 0.229 0.213 0.159 0.000 0.000 chr9 117699403 117729735
view TLR5 183 55 59 38 0 0 0.709 0.213 0.229 0.147 0.000 0.000 chr1 223104404 223148248
view TLR6 203 74 51 29 0 0 0.787 0.287 0.198 0.112 0.000 0.000 chr4 38817897 38861817
view TLR7 96 32 155 68 1 0 0.372 0.124 0.601 0.264 0.004 0.000 chrX 12862072 12895361
view TLR8 89 23 165 78 0 0 0.345 0.089 0.640 0.302 0.000 0.000 chrX 12901620 12928169
view TLR9 185 56 70 46 0 0 0.717 0.217 0.271 0.178 0.000 0.000 chr3 52216080 52230645
view TLX1 233 86 23 17 0 0 0.903 0.333 0.089 0.066 0.000 0.000 chr10 101126300 101142789
view TLX2 185 60 69 42 2 1 0.717 0.233 0.267 0.163 0.008 0.004 chr2 74509450 74522148
view TLX3 200 62 56 42 0 0 0.775 0.240 0.217 0.163 0.000 0.000 chr5 171304248 171317139
view TM2D1 193 67 50 27 0 0 0.748 0.260 0.194 0.105 0.000 0.000 chr1 61676046 61730141
view TM2D2 215 77 39 25 1 1 0.833 0.298 0.151 0.097 0.004 0.004 chr8 38983808 39001509