JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP10_chr16_84695000_84784922	0/0	a0005	798	5	5	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	a0006	798	2	2	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	a0007	798	2	2	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	a0008	798	1	0	0	0	0	1	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	a0009	798	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	a0010	798	1	0	1	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP11_chrX_47228009_47253328	1/1	a0001	920	276	73	50	115	9	27	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	a0002	920	3	3	0	0	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	a0003	22	1	0	0	1	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	a0004	841	1	0	0	1	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	a0005	920	1	0	0	1	0	0	copy fasta	USP11	chrX	47228009	47253328
USP12_chr13_27061156_27176811	1/0	a0001	370	167	58	38	36	6	28	copy fasta	USP12	chr13	27061156	27176811
USP13_chr3_179648040_179794401	1/1	a0001	863	293	88	58	101	8	36	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	a0002	863	3	0	0	3	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	a0003	863	2	0	0	0	0	2	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	a0004	863	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	a0005	863	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP14_chr18_153557_219629	1/1	a0001	494	379	96	74	145	14	48	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	a0002	494	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP15_chr12_62255404_62421389	1/1	a0001	981	348	86	70	148	10	32	copy fasta	USP15	chr12	62255404	62421389
USP16_chr21_29019668_29059488	1/1	a0001	823	352	92	60	164	8	26	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0002	823	61	4	16	28	3	10	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0003	823	3	0	0	3	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0004	823	2	0	0	2	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0005	823	2	0	0	0	0	2	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0006	823	1	0	0	1	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0007	823	1	0	0	1	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0008	823	1	0	0	1	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0009	823	1	1	0	0	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0010	823	1	0	0	0	1	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	a0011	823	1	1	0	0	0	0	copy fasta	USP16	chr21	29019668	29059488
USP17L10_chr4_9205657_9217249	1/0	a0001	530	4	0	2	1	0	0	copy fasta	USP17L10	chr4	9205657	9217249
USP17L10_chr4_9205657_9217249	0/0	a0002	413	1	0	0	1	0	0	copy fasta	USP17L10	chr4	9205657	9217249
USP17L11_chr4_9210405_9221997	0/0	a0001	413	2	0	2	0	0	0	copy fasta	USP17L11	chr4	9210405	9221997
USP17L12_chr4_9215152_9226744	0/0	a0000	0	1	0	0	1	0	0	copy fasta	USP17L12	chr4	9215152	9226744
USP17L12_chr4_9215152_9226744	0/0	a0001	530	3	0	1	2	0	0	copy fasta	USP17L12	chr4	9215152	9226744
USP17L12_chr4_9215152_9226744	0/0	a0002	530	2	0	1	1	0	0	copy fasta	USP17L12	chr4	9215152	9226744
USP17L13_chr4_9219896_9231488	0/0	a0000	0	2	0	2	0	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L13_chr4_9219896_9231488	0/0	a0001	51	4	0	4	0	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L13_chr4_9219896_9231488	0/0	a0002	530	1	0	0	1	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L13_chr4_9219896_9231488	1/0	a0003	530	1	0	0	0	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L13_chr4_9219896_9231488	0/0	a0004	413	1	0	0	1	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L15_chr4_9229385_9241046	0/0	a0001	530	16	2	5	4	2	3	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0002	530	8	3	1	3	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0003	530	8	0	4	3	1	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0004	530	5	0	0	4	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0005	530	4	0	2	1	1	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0006	530	4	1	0	1	1	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0007	469	4	1	1	0	1	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	a0008	530	4	0	2	1	0	1	copy fasta	USP17L15	chr4	9229385	9241046