JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CT45A7_chrX_135824229_135842280	0/0	t0003	458	1	0	1	0	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	t0004	456	1	0	1	0	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	t0005	459	1	0	1	0	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A8_chrX_135841497_135859538	0/0	t0001	441	4	1	0	3	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	t0002	441	1	1	0	0	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	t0003	444	1	0	0	0	1	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	t0004	441	1	0	0	1	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	t0005	442	1	0	0	1	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A9_chrX_135858418_135876812	0/0	t0001	799	5	2	3	0	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	t0002	799	3	1	0	2	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	t0003	799	3	1	1	1	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	t0004	799	1	1	0	0	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	t0005	798	1	0	0	0	0	1	copy fasta	CT45A9	chrX	135858418	135876812
CT47A10_chrX_120933701_120947023	0/0	t0001	432	6	0	0	6	0	0	copy fasta	CT47A10	chrX	120933701	120947023
CT47A10_chrX_120933701_120947023	0/0	t0002	431	1	0	0	1	0	0	copy fasta	CT47A10	chrX	120933701	120947023
CT47A1_chrX_120977476_120990760	0/0	t0001	394	296	67	55	133	11	30	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	t0002	394	2	2	0	0	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	t0003	394	2	1	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	t0004	395	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	t0005	394	1	0	1	0	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A2_chrX_120972606_120985928	0/0	t0001	432	150	26	32	72	2	18	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0002	432	93	30	23	27	4	9	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0003	432	2	2	0	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0004	432	2	2	0	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0005	432	1	1	0	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0006	432	1	0	0	0	0	1	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0007	434	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0008	432	1	0	0	0	0	1	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0009	459	1	0	1	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	t0010	432	1	1	0	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A3_chrX_120967746_120981068	0/0	t0001	432	109	24	21	42	4	18	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	t0002	432	85	35	20	18	2	10	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	t0003	432	2	2	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	t0004	433	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	t0005	431	1	0	1	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	t0006	433	1	0	0	1	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	t0007	434	1	1	0	0	0	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A3_chrX_120967746_120981068	0/0	t0008	433	1	0	0	0	1	0	copy fasta	CT47A3	chrX	120967746	120981068
CT47A4_chrX_120962886_120976208	0/0	t0001	432	88	28	17	30	3	10	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	t0002	432	65	27	10	18	3	7	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	t0003	432	8	1	6	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	t0004	432	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	t0005	432	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A4_chrX_120962886_120976208	0/0	t0006	429	1	0	0	1	0	0	copy fasta	CT47A4	chrX	120962886	120976208
CT47A5_chrX_120958026_120971348	0/0	t0001	432	89	26	22	23	5	13	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	t0002	432	31	10	10	7	1	3	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	t0003	432	6	0	4	0	2	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	t0004	422	1	0	0	0	0	1	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	t0005	430	1	0	0	1	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A5_chrX_120958026_120971348	0/0	t0006	432	1	0	1	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348