Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view NUTM2B 152 28 79 52 2 1 0.589 0.109 0.306 0.202 0.008 0.004 chr10 79698227 79717758
view NUTM2D 207 69 48 33 0 0 0.802 0.267 0.186 0.128 0.000 0.000 chr10 87352744 87372195
view NUTM2E 205 74 45 26 0 0 0.795 0.287 0.174 0.101 0.000 0.000 chr10 79821739 79855878
view NUTM2F 160 49 69 40 0 0 0.620 0.190 0.267 0.155 0.000 0.000 chr9 94313198 94333644
view NUTM2G 186 60 68 42 0 0 0.721 0.233 0.264 0.163 0.000 0.000 chr9 96923843 96944416
view NVL 141 37 72 42 0 0 0.547 0.143 0.279 0.163 0.000 0.000 chr1 224222345 224335172
view NWD1 149 30 67 42 0 0 0.578 0.116 0.260 0.163 0.000 0.000 chr19 16714847 16822953
view NWD2 147 42 60 39 0 0 0.570 0.163 0.233 0.151 0.000 0.000 chr4 37239743 37454463
view NXF1 202 75 53 28 0 0 0.783 0.291 0.205 0.109 0.000 0.000 chr11 62787130 62810440
view NXF2B 9 1 108 48 0 0 0.035 0.004 0.419 0.186 0.000 0.000 chrX 102355395 102445008
view NXF2 4 0 69 11 0 0 0.016 0.000 0.267 0.043 0.000 0.000 chrX 102242167 102331722
view NXF3 92 30 161 71 0 0 0.357 0.116 0.624 0.275 0.000 0.000 chrX 103070810 103098143
view NXNL1 203 67 54 37 0 0 0.787 0.260 0.209 0.143 0.000 0.000 chr19 17450425 17465926
view NXNL2 167 50 83 48 0 0 0.647 0.194 0.322 0.186 0.000 0.000 chr9 88530178 88549973
view NXN 120 27 71 33 0 0 0.465 0.105 0.275 0.128 0.000 0.000 chr17 794310 984776
view NXPE1 179 52 75 51 0 0 0.694 0.202 0.291 0.198 0.000 0.000 chr11 114513934 114564881
view NXPE2 213 80 41 23 0 0 0.826 0.310 0.159 0.089 0.000 0.000 chr11 114673527 114712069
view NXPE3 189 65 60 32 0 0 0.733 0.252 0.233 0.124 0.000 0.000 chr3 101774211 101833231
view NXPE4 215 78 33 18 0 0 0.833 0.302 0.128 0.070 0.000 0.000 chr11 114565591 114600786
view NXPH1 104 21 60 41 0 0 0.403 0.081 0.233 0.159 0.000 0.000 chr7 8428609 8757961
view NXPH2 174 58 55 33 0 0 0.674 0.225 0.213 0.128 0.000 0.000 chr2 138664157 138785390
view NXPH3 210 67 43 33 0 0 0.814 0.260 0.167 0.128 0.000 0.000 chr17 49570871 49588827
view NXPH4 190 63 63 37 0 0 0.736 0.244 0.244 0.143 0.000 0.000 chr12 57211794 57231449
view NXT1 216 81 38 21 2 1 0.837 0.314 0.147 0.081 0.008 0.004 chr20 23345791 23359771
view NXT2 81 22 171 78 1 0 0.314 0.085 0.663 0.302 0.004 0.000 chrX 109531844 109549698
view NYAP1 182 56 67 41 0 0 0.705 0.217 0.260 0.159 0.000 0.000 chr7 100478927 100499802
view NYAP2 95 21 100 52 0 0 0.368 0.081 0.388 0.202 0.000 0.000 chr2 225394710 225708654
view NYNRIN 224 83 28 19 0 0 0.868 0.322 0.109 0.074 0.000 0.000 chr14 24394003 24424283
view NYX 92 25 153 71 0 0 0.357 0.097 0.593 0.275 0.000 0.000 chrX 41442343 41480652
view OAF 199 61 50 35 0 0 0.771 0.236 0.194 0.136 0.000 0.000 chr11 120206032 120235334
view OARD1 184 66 71 36 0 0 0.713 0.256 0.275 0.140 0.000 0.000 chr6 41059772 41077356
view OAS1 217 84 39 19 0 0 0.841 0.326 0.151 0.074 0.000 0.000 chr12 112901962 112924903
view OAS2 189 61 57 33 0 0 0.733 0.236 0.221 0.128 0.000 0.000 chr12 112973519 113016723
view OAS3 184 60 64 35 1 1 0.713 0.233 0.248 0.136 0.004 0.004 chr12 112933474 112978251
view OASL 194 61 56 39 0 0 0.752 0.236 0.217 0.151 0.000 0.000 chr12 121014111 121044246
view OAT 190 56 56 38 0 0 0.736 0.217 0.217 0.147 0.000 0.000 chr10 124392303 124423923
view OBI1 147 36 78 49 0 0 0.570 0.140 0.302 0.190 0.000 0.000 chr13 78609289 78664155
view OBP2A 227 78 26 24 2 0 0.880 0.302 0.101 0.093 0.008 0.000 chr9 135541126 135554969
view OBP2B 223 80 33 24 1 0 0.864 0.310 0.128 0.093 0.004 0.000 chr9 133200279 133214250
view OBSCN 159 43 67 39 0 0 0.616 0.167 0.260 0.151 0.000 0.000 chr1 228203044 228383876
view OBSL1 189 52 56 43 0 0 0.733 0.202 0.217 0.167 0.000 0.000 chr2 219545728 219576539
view OC90 203 69 44 27 1 0 0.787 0.267 0.171 0.105 0.004 0.000 chr8 132019216 132064382
view OCA2 54 3 112 64 0 0 0.209 0.012 0.434 0.248 0.000 0.000 chr15 27749875 28104315
view OCEL1 221 74 34 28 0 0 0.857 0.287 0.132 0.109 0.000 0.000 chr19 17221226 17234219
view OCIAD1 170 60 82 41 0 0 0.659 0.233 0.318 0.159 0.000 0.000 chr4 48826088 48866815
view OCIAD2 181 60 69 39 0 0 0.702 0.233 0.267 0.151 0.000 0.000 chr4 48880019 48911774
view OCLN 144 49 96 48 0 0 0.558 0.190 0.372 0.186 0.000 0.000 chr5 69487790 69563104
view OCM2 224 82 30 20 0 0 0.868 0.318 0.116 0.078 0.000 0.000 chr7 97979687 97995196
view OCM 224 82 29 19 0 0 0.868 0.318 0.112 0.074 0.000 0.000 chr7 5875798 5891363
view OCRL 75 25 172 75 0 0 0.291 0.097 0.667 0.291 0.000 0.000 chrX 129535259 129597556