Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view OCSTAMP 220 82 34 19 0 0 0.853 0.318 0.132 0.074 0.000 0.000 chr20 46535946 46555654
view ODAD1 198 60 48 34 0 0 0.767 0.233 0.186 0.132 0.000 0.000 chr19 48291462 48326971
view ODAD2 151 43 65 41 0 0 0.585 0.167 0.252 0.159 0.000 0.000 chr10 27807168 28004079
view ODAD3 198 67 55 33 0 0 0.767 0.260 0.213 0.128 0.000 0.000 chr19 11415605 11440121
view ODAD4 169 46 67 43 0 0 0.655 0.178 0.260 0.167 0.000 0.000 chr17 41925617 41971503
view ODAM 222 83 32 20 3 1 0.860 0.322 0.124 0.078 0.012 0.004 chr4 70190725 70209576
view ODAPH 226 85 31 20 0 0 0.876 0.329 0.120 0.078 0.000 0.000 chr4 75551066 75569817
view ODC1 218 77 38 27 0 0 0.845 0.298 0.147 0.105 0.000 0.000 chr2 10434968 10453327
view ODF1 229 83 24 18 2 1 0.888 0.322 0.093 0.070 0.008 0.004 chr8 102546589 102566018
view ODF2L 202 78 52 26 1 1 0.783 0.302 0.202 0.101 0.004 0.004 chr1 86341837 86401323
view ODF2 172 62 69 32 0 0 0.667 0.240 0.267 0.124 0.000 0.000 chr9 128451006 128506292
view ODF3B 202 65 50 35 1 0 0.783 0.252 0.194 0.136 0.004 0.000 chr22 50525426 50537498
view ODF3L1 192 60 60 40 0 0 0.744 0.233 0.233 0.155 0.000 0.000 chr15 75719041 75732688
view ODF3L2 161 55 77 36 0 0 0.624 0.213 0.298 0.140 0.000 0.000 chr19 458361 479983
view ODF3 193 62 58 38 1 1 0.748 0.240 0.225 0.147 0.004 0.004 chr11 191761 205258
view ODF4 215 80 42 24 0 0 0.833 0.310 0.163 0.093 0.000 0.000 chr17 8334840 8351046
view ODR4 204 82 49 22 0 0 0.791 0.318 0.190 0.085 0.000 0.000 chr1 186370838 186426375
view OFD1 99 39 154 63 0 0 0.384 0.151 0.597 0.244 0.000 0.000 chrX 13729748 13774357
view OGA 172 57 72 40 0 0 0.667 0.221 0.279 0.155 0.000 0.000 chr10 101779450 101823444
view OGDHL 157 34 83 56 0 0 0.609 0.132 0.322 0.217 0.000 0.000 chr10 49729641 49767323
view OGDH 152 49 79 45 0 0 0.589 0.190 0.306 0.174 0.000 0.000 chr7 44601627 44714066
view OGFOD1 214 86 40 17 0 0 0.829 0.333 0.155 0.066 0.000 0.000 chr16 56446554 56484104
view OGFOD2 182 55 72 46 0 0 0.705 0.213 0.279 0.178 0.000 0.000 chr12 122970244 122985042
view OGFOD3 173 47 69 47 0 0 0.671 0.182 0.267 0.182 0.000 0.000 chr17 82384210 82423586
view OGFRL1 207 71 46 32 0 0 0.802 0.275 0.178 0.124 0.000 0.000 chr6 71283811 71314059
view OGFR 210 69 45 33 0 0 0.814 0.267 0.174 0.128 0.000 0.000 chr20 62799835 62819000
view OGG1 220 81 33 21 0 0 0.853 0.314 0.128 0.081 0.000 0.000 chr3 9744952 9762407
view OGN 182 67 61 27 0 0 0.705 0.260 0.236 0.105 0.000 0.000 chr9 92378268 92409578
view OGT 65 15 179 78 0 0 0.252 0.058 0.694 0.302 0.000 0.000 chrX 71528104 71580892
view OIP5 177 63 78 39 0 0 0.686 0.244 0.302 0.151 0.000 0.000 chr15 41304273 41337591
view OIT3 137 40 110 59 0 0 0.531 0.155 0.426 0.229 0.000 0.000 chr10 72888739 72938036
view OLA1 130 37 107 58 0 0 0.504 0.143 0.415 0.225 0.000 0.000 chr2 174067447 174253532
view OLAH 202 67 43 30 0 0 0.783 0.260 0.167 0.116 0.000 0.000 chr10 15038943 15078853
view OLFM1 179 43 51 37 0 0 0.694 0.167 0.198 0.143 0.000 0.000 chr9 135082668 135126180
view OLFM2 170 48 61 40 0 0 0.659 0.186 0.236 0.155 0.000 0.000 chr19 9848718 9941515
view OLFM3 152 45 50 33 0 0 0.589 0.174 0.194 0.128 0.000 0.000 chr1 101797560 102001926
view OLFM4 232 85 24 18 0 0 0.899 0.329 0.093 0.070 0.000 0.000 chr13 53023813 53057057
view OLFML1 193 59 54 38 1 1 0.748 0.229 0.209 0.147 0.004 0.004 chr11 7480506 7516377
view OLFML2A 189 62 52 30 0 0 0.733 0.240 0.202 0.116 0.000 0.000 chr9 124772133 124819882
view OLFML2B 191 67 53 28 1 1 0.740 0.260 0.205 0.109 0.004 0.004 chr1 161978192 162028869
view OLFML3 229 83 27 21 1 0 0.888 0.322 0.105 0.081 0.004 0.000 chr1 113974474 113987253
view OLIG1 226 82 29 21 1 0 0.876 0.318 0.112 0.081 0.004 0.000 chr21 33065141 33077413
view OLIG2 223 75 30 26 1 0 0.864 0.291 0.116 0.101 0.004 0.000 chr21 33020935 33034185
view OLIG3 225 82 29 19 1 1 0.872 0.318 0.112 0.074 0.004 0.004 chr6 137487199 137499394
view OLR1 200 72 54 30 0 0 0.775 0.279 0.209 0.116 0.000 0.000 chr12 10153301 10177132
view OMA1 191 59 53 35 0 0 0.740 0.229 0.205 0.136 0.000 0.000 chr1 58475719 58551726
view OMD 213 82 43 21 0 0 0.826 0.318 0.167 0.081 0.000 0.000 chr9 92407380 92429471
view OMG 181 64 72 37 2 2 0.702 0.248 0.279 0.143 0.008 0.008 chr17 31289647 31302239
view OMP 219 77 37 26 0 0 0.849 0.298 0.143 0.101 0.000 0.000 chr11 77097840 77108331
view ONECUT1 205 68 39 24 0 0 0.795 0.264 0.151 0.093 0.000 0.000 chr15 52750053 52795336