Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view OR10H5 197 65 55 34 0 0 0.764 0.252 0.213 0.132 0.000 0.000 chr19 15782661 15805357
view OR10J1 227 85 28 18 1 1 0.880 0.329 0.109 0.070 0.004 0.004 chr1 159434722 159445967
view OR10J5 216 87 42 18 0 0 0.837 0.337 0.163 0.070 0.000 0.000 chr1 159530078 159541007
view OR10K1 224 84 32 20 2 1 0.868 0.326 0.124 0.078 0.008 0.004 chr1 158456834 158472458
view OR10K2 199 68 52 32 1 0 0.771 0.264 0.202 0.124 0.004 0.000 chr1 158413210 158431237
view OR10P1 218 82 38 23 2 0 0.845 0.318 0.147 0.089 0.008 0.000 chr12 55631892 55642833
view OR10Q1 227 82 30 22 1 1 0.880 0.318 0.116 0.085 0.004 0.004 chr11 58222882 58233918
view OR10R2 222 84 33 19 3 2 0.860 0.326 0.128 0.074 0.012 0.008 chr1 158467220 158485936
view OR10S1 223 85 33 19 1 0 0.864 0.329 0.128 0.074 0.004 0.000 chr11 123971661 123982781
view OR10T2 220 80 35 23 2 1 0.853 0.310 0.136 0.089 0.008 0.004 chr1 158393522 158404466
view OR10V1 213 81 44 23 0 0 0.826 0.314 0.171 0.089 0.000 0.000 chr11 59707916 59718845
view OR10W1 180 57 77 47 1 1 0.698 0.221 0.298 0.182 0.004 0.004 chr11 58261792 58273260
view OR10X1 214 75 44 30 0 0 0.829 0.291 0.171 0.116 0.000 0.000 chr1 158573919 158584899
view OR10Z1 222 82 35 22 1 1 0.860 0.318 0.136 0.085 0.004 0.004 chr1 158600268 158617514
view OR11A1 220 83 32 21 0 0 0.853 0.322 0.124 0.081 0.000 0.000 chr6 29420504 29462071
view OR11G2 240 91 17 13 0 0 0.930 0.353 0.066 0.050 0.000 0.000 chr14 20185896 20206075
view OR11H12 162 61 50 31 41 9 0.628 0.236 0.194 0.120 0.159 0.035 chr14 18596117 18607097
view OR11H1 131 54 44 31 77 14 0.508 0.209 0.171 0.120 0.298 0.054 chr22 15523192 15534139
view OR11H2 118 52 21 18 116 33 0.457 0.202 0.081 0.070 0.450 0.128 chr14 19707936 19718883
view OR11H4 219 85 33 17 0 0 0.849 0.329 0.128 0.066 0.000 0.000 chr14 20234286 20249349
view OR11H6 224 83 30 19 0 0 0.868 0.322 0.116 0.074 0.000 0.000 chr14 20218710 20229702
view OR11L1 196 57 58 46 1 0 0.760 0.221 0.225 0.178 0.004 0.000 chr1 247835928 247846896
view OR12D2 227 85 31 20 0 0 0.880 0.329 0.120 0.078 0.000 0.000 chr6 29390631 29403008
view OR12D3 218 81 39 23 0 0 0.845 0.314 0.151 0.089 0.000 0.000 chr6 29368423 29380291
view OR13A1 210 78 41 21 1 0 0.814 0.302 0.159 0.081 0.004 0.000 chr10 45297650 45320608
view OR13C2 205 75 53 30 0 0 0.795 0.291 0.205 0.116 0.000 0.000 chr9 104599671 104610627
view OR13C3 227 90 29 13 1 1 0.880 0.349 0.112 0.050 0.004 0.004 chr9 104530749 104541856
view OR13C4 228 93 29 11 1 1 0.884 0.360 0.112 0.043 0.004 0.004 chr9 104521253 104532209
view OR13C5 211 80 46 24 0 0 0.818 0.310 0.178 0.093 0.000 0.000 chr9 104593457 104604413
view OR13C8 215 86 41 18 1 0 0.833 0.333 0.159 0.070 0.004 0.000 chr9 104564168 104575130
view OR13C9 204 73 53 31 0 0 0.791 0.283 0.205 0.120 0.000 0.000 chr9 104612248 104623204
view OR13D1 197 65 58 38 0 0 0.764 0.252 0.225 0.147 0.000 0.000 chr9 104689518 104700462
view OR13F1 219 83 36 20 1 1 0.849 0.322 0.140 0.078 0.004 0.004 chr9 104499263 104510222
view OR13G1 206 73 44 27 2 0 0.798 0.283 0.171 0.105 0.008 0.000 chr1 247665812 247684739
view OR13H1 96 31 161 73 0 0 0.372 0.120 0.624 0.283 0.000 0.000 chrX 131539074 131550000
view OR13J1 230 90 26 14 2 1 0.891 0.349 0.101 0.054 0.008 0.004 chr9 35864463 35875401
view OR14A16 170 48 86 56 0 0 0.659 0.186 0.333 0.217 0.000 0.000 chr1 247809660 247829119
view OR14A2 173 59 69 33 1 0 0.671 0.229 0.267 0.128 0.004 0.000 chr1 247717957 247753141
view OR14C36 223 88 35 17 0 0 0.864 0.341 0.136 0.066 0.000 0.000 chr1 248343775 248354713
view OR14J1 223 88 34 16 1 1 0.864 0.341 0.132 0.062 0.004 0.004 chr6 29296701 29318017
view OR14K1 195 71 60 34 2 0 0.756 0.275 0.233 0.132 0.008 0.000 chr1 247733615 247744559
view OR14L1 216 78 42 27 0 0 0.837 0.302 0.163 0.105 0.000 0.000 chr1 247612143 247627372
view OR1A1 216 83 42 22 0 0 0.837 0.322 0.163 0.085 0.000 0.000 chr17 3202667 3223896
view OR1A2 214 78 42 26 1 0 0.829 0.302 0.163 0.101 0.004 0.000 chr17 3192519 3203448
view OR1B1 209 77 41 26 0 0 0.810 0.298 0.159 0.101 0.000 0.000 chr9 122623125 122662627
view OR1C1 221 82 34 22 2 0 0.857 0.318 0.132 0.085 0.008 0.000 chr1 247749846 247765556
view OR1D2 196 62 55 37 0 0 0.760 0.240 0.213 0.143 0.000 0.000 chr17 3083484 3109422
view OR1D5 221 78 32 24 4 2 0.857 0.302 0.124 0.093 0.016 0.008 chr17 3057669 3068607
view OR1E1 189 70 61 28 1 0 0.733 0.271 0.236 0.109 0.004 0.000 chr17 3392104 3403410
view OR1E2 223 82 34 22 0 0 0.864 0.318 0.132 0.085 0.000 0.000 chr17 3427870 3438841