Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view OR4C3 219 80 36 22 0 0 0.849 0.310 0.140 0.085 0.000 0.000 chr11 48319920 48330955
view OR4C46 221 80 36 24 0 0 0.857 0.310 0.140 0.093 0.000 0.000 chr11 54598069 54608998
view OR4C5 196 72 59 33 2 0 0.760 0.279 0.229 0.128 0.008 0.000 chr11 48360485 48371465
view OR4C6 108 31 124 61 0 0 0.419 0.120 0.481 0.236 0.000 0.000 chr11 55657201 55671096
view OR4D10 214 73 42 30 0 0 0.829 0.283 0.163 0.116 0.000 0.000 chr11 59468315 59484361
view OR4D11 193 71 64 33 0 0 0.748 0.275 0.248 0.128 0.000 0.000 chr11 59498576 59509511
view OR4D1 188 50 61 47 0 0 0.729 0.194 0.236 0.182 0.000 0.000 chr17 58143384 58164585
view OR4D2 192 60 60 42 1 0 0.744 0.233 0.233 0.163 0.004 0.000 chr17 58161982 58176116
view OR4D5 224 90 31 14 2 0 0.868 0.349 0.120 0.054 0.008 0.000 chr11 123934617 123945573
view OR4D6 210 73 45 29 0 0 0.814 0.283 0.174 0.112 0.000 0.000 chr11 59451961 59462905
view OR4D9 182 65 70 37 1 1 0.705 0.252 0.271 0.143 0.004 0.004 chr11 59506539 59525703
view OR4E1 226 85 28 17 1 1 0.876 0.329 0.109 0.066 0.004 0.004 chr14 21662886 21678818
view OR4E2 228 87 28 17 0 0 0.884 0.337 0.109 0.066 0.000 0.000 chr14 21648835 21672642
view OR4F15 194 52 60 49 0 0 0.752 0.202 0.233 0.190 0.000 0.000 chr15 101807202 101825197
view OR4F16 88 27 128 61 14 1 0.341 0.105 0.496 0.236 0.054 0.004 chr1 680716 691654
view OR4F17 113 58 43 24 91 19 0.438 0.225 0.167 0.093 0.353 0.074 chr19 102104 118156
view OR4F21 85 26 121 50 9 7 0.329 0.101 0.469 0.194 0.035 0.027 chr8 161086 172024
view OR4F29 4 0 27 5 0 0 0.016 0.000 0.105 0.019 0.000 0.000 chr1 445740 456678
view OR4F3 65 25 132 56 7 2 0.252 0.097 0.512 0.217 0.027 0.008 chr5 181362268 181373262
view OR4F5 107 56 66 30 67 17 0.415 0.217 0.256 0.116 0.260 0.066 chr1 60419 76585
view OR4F6 185 50 72 55 1 0 0.717 0.194 0.279 0.213 0.004 0.000 chr15 101798509 101811887
view OR4K13 232 89 25 16 0 0 0.899 0.345 0.097 0.062 0.000 0.000 chr14 20024399 20041038
view OR4K14 218 81 33 18 0 0 0.845 0.314 0.128 0.070 0.000 0.000 chr14 20009143 20024307
view OR4K15 229 85 28 19 0 0 0.888 0.329 0.109 0.074 0.000 0.000 chr14 19970591 19981565
view OR4K17 221 82 31 19 1 1 0.857 0.318 0.120 0.074 0.004 0.004 chr14 20105739 20127199
view OR4K1 125 55 28 21 105 29 0.484 0.213 0.109 0.081 0.407 0.112 chr14 19925917 19941757
view OR4K2 126 48 21 14 111 43 0.488 0.186 0.081 0.054 0.430 0.167 chr14 19870142 19888932
view OR4K5 117 48 17 14 124 43 0.453 0.186 0.066 0.054 0.481 0.167 chr14 19915607 19926578
view OR4L1 219 82 36 21 1 0 0.849 0.318 0.140 0.081 0.004 0.000 chr14 20055045 20065983
view OR4M1 137 59 26 20 93 24 0.531 0.229 0.101 0.078 0.360 0.093 chr14 19768504 19788696
view OR4M2B 107 40 60 39 80 19 0.415 0.155 0.233 0.151 0.310 0.074 chr15 21632909 21643992
view OR4M2 25 7 90 30 9 0 0.097 0.027 0.349 0.116 0.035 0.000 chr15 22075527 22086610
view OR4N2 136 56 42 28 77 18 0.527 0.217 0.163 0.109 0.298 0.070 chr14 19798770 19835253
view OR4N4C 107 42 76 38 67 19 0.415 0.163 0.295 0.147 0.260 0.074 chr15 21646844 21657968
view OR4N4 22 5 76 33 3 0 0.085 0.019 0.295 0.128 0.012 0.000 chr15 22089522 22100862
view OR4N5 222 84 35 20 1 1 0.860 0.326 0.136 0.078 0.004 0.004 chr14 20133820 20150471
view OR4P4 111 31 120 61 2 1 0.430 0.120 0.465 0.236 0.008 0.004 chr11 55630113 55645309
view OR4Q3 137 61 20 18 100 25 0.531 0.236 0.078 0.070 0.388 0.097 chr14 19738571 19754469
view OR4S1 212 73 46 32 0 0 0.822 0.283 0.178 0.124 0.000 0.000 chr11 48301223 48312152
view OR4S2 113 37 119 56 1 0 0.438 0.143 0.461 0.217 0.004 0.000 chr11 55643327 55657854
view OR4X1 200 73 57 32 1 0 0.775 0.283 0.221 0.124 0.004 0.000 chr11 48258861 48269778
view OR4X2 218 83 40 22 0 0 0.845 0.322 0.155 0.085 0.000 0.000 chr11 48240104 48251015
view OR51A2 171 56 80 45 0 0 0.663 0.217 0.310 0.174 0.000 0.000 chr11 4949772 4960713
view OR51A4 222 81 36 24 0 0 0.860 0.314 0.140 0.093 0.000 0.000 chr11 4937831 4952605
view OR51A7 225 82 31 22 1 0 0.872 0.318 0.120 0.085 0.004 0.000 chr11 4898783 4914462
view OR51B2 230 86 28 19 0 0 0.891 0.333 0.109 0.074 0.000 0.000 chr11 5318359 5329297
view OR51B4 234 85 24 20 0 0 0.907 0.329 0.093 0.078 0.000 0.000 chr11 5296014 5306946
view OR51B5 232 85 24 20 1 0 0.899 0.329 0.093 0.078 0.004 0.000 chr11 5337586 5348524
view OR51B6 232 85 26 20 0 0 0.899 0.329 0.101 0.078 0.000 0.000 chr11 5346508 5357446
view OR51C1P 227 85 27 17 1 0 0.880 0.329 0.105 0.066 0.004 0.000 chr11 4685423 4702853