Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view OR5AK2 227 89 24 11 4 2 0.880 0.345 0.093 0.043 0.016 0.008 chr11 56983914 56994843
view OR5AN1 178 60 66 35 0 0 0.690 0.233 0.256 0.136 0.000 0.000 chr11 59353895 59376714
view OR5AP2 218 82 40 23 0 0 0.845 0.318 0.155 0.089 0.000 0.000 chr11 56636489 56647439
view OR5AR1 215 82 39 20 1 1 0.833 0.318 0.151 0.078 0.004 0.004 chr11 56658686 56669618
view OR5AS1 215 82 40 21 0 0 0.833 0.318 0.155 0.081 0.000 0.000 chr11 56022654 56043191
view OR5AU1 234 90 21 13 1 0 0.907 0.349 0.081 0.050 0.004 0.000 chr14 21149865 21161063
view OR5B12 207 73 49 32 1 0 0.802 0.283 0.190 0.124 0.004 0.000 chr11 58433994 58447236
view OR5B17 189 69 67 34 0 0 0.733 0.267 0.260 0.132 0.000 0.000 chr11 58353124 58364069
view OR5B21 186 67 71 37 0 0 0.721 0.260 0.275 0.143 0.000 0.000 chr11 58501807 58513105
view OR5B2 190 68 59 30 2 1 0.736 0.264 0.229 0.116 0.008 0.004 chr11 58416238 58433121
view OR5B3 192 66 64 37 0 0 0.744 0.256 0.248 0.143 0.000 0.000 chr11 58397464 58411874
view OR5BS1P 228 85 28 18 0 0 0.884 0.329 0.109 0.070 0.000 0.000 chr12 48554882 48567956
view OR5C1 220 81 34 22 0 0 0.853 0.314 0.132 0.085 0.000 0.000 chr9 122783933 122794895
view OR5D13 215 82 43 23 0 0 0.833 0.318 0.167 0.089 0.000 0.000 chr11 55768438 55779382
view OR5D14 222 87 33 16 2 1 0.860 0.337 0.128 0.062 0.008 0.004 chr11 55790556 55801500
view OR5D16 210 78 45 25 2 1 0.814 0.302 0.174 0.097 0.008 0.004 chr11 55833752 55844738
view OR5D18 216 80 35 23 6 2 0.837 0.310 0.136 0.089 0.023 0.008 chr11 55814630 55825571
view OR5D3P 223 85 30 17 2 1 0.864 0.329 0.116 0.066 0.008 0.004 chr11 55718776 55734621
view OR5F1 217 87 40 18 1 0 0.841 0.337 0.155 0.070 0.004 0.000 chr11 55988681 55999625
view OR5H14 214 76 40 28 1 0 0.829 0.295 0.155 0.109 0.004 0.000 chr3 98142479 98161614
view OR5H15 221 82 35 22 1 0 0.857 0.318 0.136 0.085 0.004 0.000 chr3 98161696 98174774
view OR5H1 208 72 48 32 2 1 0.806 0.279 0.186 0.124 0.008 0.004 chr3 98125721 98143548
view OR5H2 219 77 34 25 0 0 0.849 0.298 0.132 0.097 0.000 0.000 chr3 98277505 98289070
view OR5H6 220 79 37 25 0 0 0.853 0.306 0.143 0.097 0.000 0.000 chr3 98259244 98270356
view OR5I1 216 83 40 21 2 1 0.837 0.322 0.155 0.081 0.008 0.004 chr11 55930456 55941400
view OR5J2 220 86 34 17 3 1 0.853 0.333 0.132 0.066 0.012 0.004 chr11 56171618 56182556
view OR5K1 218 79 38 25 1 0 0.845 0.306 0.147 0.097 0.004 0.000 chr3 98458201 98477924
view OR5K2 242 94 14 9 1 1 0.938 0.364 0.054 0.035 0.004 0.004 chr3 98492681 98503631
view OR5K3 235 90 22 14 0 0 0.911 0.349 0.085 0.054 0.000 0.000 chr3 98385666 98396631
view OR5K4 225 82 32 22 1 1 0.872 0.318 0.124 0.085 0.004 0.004 chr3 98348854 98359819
view OR5L1 219 88 32 15 3 0 0.849 0.341 0.124 0.058 0.012 0.000 chr11 55806367 55817476
view OR5L2 223 86 31 17 2 0 0.864 0.333 0.120 0.066 0.008 0.000 chr11 55822219 55833154
view OR5M10 218 92 36 13 4 0 0.845 0.357 0.140 0.050 0.016 0.000 chr11 56571774 56582721
view OR5M11 213 86 43 19 2 0 0.826 0.333 0.167 0.074 0.008 0.000 chr11 56537340 56548257
view OR5M1 192 67 63 36 0 0 0.744 0.260 0.244 0.140 0.000 0.000 chr11 56604236 56619874
view OR5M3 225 90 32 14 1 1 0.872 0.349 0.124 0.054 0.004 0.004 chr11 56464274 56478352
view OR5M8 215 83 38 20 4 1 0.833 0.322 0.147 0.078 0.016 0.004 chr11 56485435 56496370
view OR5M9 225 90 33 15 0 0 0.872 0.349 0.128 0.058 0.000 0.000 chr11 56457469 56468401
view OR5P2 155 63 97 38 0 0 0.601 0.244 0.376 0.147 0.000 0.000 chr11 7790974 7801942
view OR5P3 211 77 46 27 0 0 0.818 0.298 0.178 0.105 0.000 0.000 chr11 7819818 7835840
view OR5T1 189 70 64 31 0 0 0.733 0.271 0.248 0.120 0.000 0.000 chr11 56269154 56281819
view OR5T2 223 83 35 22 0 0 0.864 0.322 0.136 0.085 0.000 0.000 chr11 56226282 56239255
view OR5T3 185 66 67 36 1 0 0.717 0.256 0.260 0.140 0.004 0.000 chr11 56247254 56258222
view OR5V1 213 77 45 28 0 0 0.826 0.298 0.174 0.109 0.000 0.000 chr6 29348749 29373865
view OR5W2 217 83 40 21 1 1 0.841 0.322 0.155 0.081 0.004 0.004 chr11 55908650 55919582
view OR6A2 229 90 28 14 1 1 0.888 0.349 0.109 0.054 0.004 0.004 chr11 6786736 6804689
view OR6B1 207 76 47 27 3 1 0.802 0.295 0.182 0.105 0.012 0.004 chr7 143995320 144013793
view OR6B2 231 85 25 19 1 0 0.895 0.329 0.097 0.074 0.004 0.000 chr2 240024491 240035429
view OR6B3 221 78 36 27 1 0 0.857 0.302 0.140 0.105 0.004 0.000 chr2 240039571 240058521
view OR6C1 236 93 18 10 2 1 0.915 0.360 0.070 0.039 0.008 0.004 chr12 55309343 55327364