Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view OSMR 190 66 48 25 0 0 0.736 0.256 0.186 0.097 0.000 0.000 chr5 38841012 38940641
view OSM 216 76 41 28 1 1 0.837 0.295 0.159 0.109 0.004 0.004 chr22 30257829 30271851
view OSR1 210 70 47 34 0 0 0.814 0.271 0.182 0.132 0.000 0.000 chr2 19346485 19363623
view OSR2 148 50 106 52 0 0 0.574 0.194 0.411 0.202 0.000 0.000 chr8 98939442 98957100
view OST4 168 45 86 57 1 1 0.651 0.174 0.333 0.221 0.004 0.004 chr2 27065472 27076654
view OSTC 185 56 65 42 0 0 0.717 0.217 0.252 0.163 0.000 0.000 chr4 108645599 108672820
view OSTF1 182 59 58 37 0 0 0.705 0.229 0.225 0.143 0.000 0.000 chr9 75083514 75152265
view OSTM1 193 69 59 32 0 0 0.748 0.267 0.229 0.124 0.000 0.000 chr6 108036409 108079741
view OSTN 200 66 40 29 0 0 0.775 0.256 0.155 0.112 0.000 0.000 chr3 191194241 191270615
view OTC 89 24 159 75 0 0 0.345 0.093 0.616 0.291 0.000 0.000 chrX 38347604 38426446
view OTOA 159 47 71 40 0 0 0.616 0.182 0.275 0.155 0.000 0.000 chr16 21658968 21765729
view OTOF 164 33 71 50 0 0 0.636 0.128 0.275 0.194 0.000 0.000 chr2 26452203 26483124
view OTOF 141 28 76 48 0 0 0.547 0.109 0.295 0.186 0.000 0.000 chr2 26452203 26563756
view OTOGL 83 11 100 55 0 0 0.322 0.043 0.388 0.213 0.000 0.000 chr12 80094537 80385880
view OTOG 133 30 80 52 0 0 0.516 0.116 0.310 0.202 0.000 0.000 chr11 17542259 17651044
view OTOL1 224 79 32 24 0 0 0.868 0.306 0.124 0.093 0.000 0.000 chr3 161491808 161508942
view OTOP1 213 73 35 26 0 0 0.826 0.283 0.136 0.101 0.000 0.000 chr4 4183726 4231929
view OTOP2 215 72 34 25 1 0 0.833 0.279 0.132 0.097 0.004 0.000 chr17 74919273 74938912
view OTOP3 233 82 22 20 0 0 0.903 0.318 0.085 0.078 0.000 0.000 chr17 74930898 74954992
view OTOR 242 95 12 7 3 2 0.938 0.368 0.047 0.027 0.012 0.008 chr20 16743358 16757164
view OTOS 217 75 39 29 1 0 0.841 0.291 0.151 0.112 0.004 0.000 chr2 240134026 240145658
view OTP 219 79 34 22 1 0 0.849 0.306 0.132 0.085 0.004 0.000 chr5 77623712 77643713
view OTUB1 164 42 87 57 0 0 0.636 0.163 0.337 0.221 0.000 0.000 chr11 63981438 64003412
view OTUB2 197 66 55 35 0 0 0.764 0.256 0.213 0.136 0.000 0.000 chr14 94021340 94053930
view OTUD1 216 78 40 25 1 1 0.837 0.302 0.155 0.097 0.004 0.004 chr10 23434075 23447377
view OTUD3 186 58 58 35 0 0 0.721 0.225 0.225 0.136 0.000 0.000 chr1 19877395 19917945
view OTUD4 172 58 73 38 0 0 0.667 0.225 0.283 0.147 0.000 0.000 chr4 145128650 145185589
view OTUD5 68 13 172 79 0 0 0.264 0.050 0.667 0.306 0.000 0.000 chrX 48917024 48962607
view OTUD6A 104 35 148 66 2 1 0.403 0.136 0.574 0.256 0.008 0.004 chrX 70057457 70069179
view OTUD6B 185 70 70 34 0 0 0.717 0.271 0.271 0.132 0.000 0.000 chr8 91065344 91092093
view OTUD7A 122 30 81 51 0 0 0.473 0.116 0.314 0.198 0.000 0.000 chr15 31470398 31875673
view OTUD7B 138 47 86 41 0 0 0.535 0.182 0.333 0.159 0.000 0.000 chr1 149932812 150015726
view OTULINL 189 61 57 38 0 0 0.733 0.236 0.221 0.147 0.000 0.000 chr5 14576792 14621180
view OTULIN 176 63 70 38 0 0 0.682 0.244 0.271 0.147 0.000 0.000 chr5 14659718 14704850
view OTX1 182 55 72 48 1 0 0.705 0.213 0.279 0.186 0.004 0.000 chr2 63045830 63062831
view OTX2 201 63 52 37 0 0 0.779 0.244 0.202 0.143 0.000 0.000 chr14 56794905 56815479
view OVCA2 191 57 52 33 0 0 0.740 0.221 0.202 0.128 0.000 0.000 chr17 2037022 2048425
view OVCH1 199 68 41 26 0 0 0.771 0.264 0.159 0.101 0.000 0.000 chr12 29434853 29502686
view OVCH2 237 90 20 14 0 0 0.919 0.349 0.078 0.054 0.000 0.000 chr11 7684437 7711477
view OVGP1 211 77 42 25 2 1 0.818 0.298 0.163 0.097 0.008 0.004 chr1 111409319 111432735
view OVOL1 221 88 33 13 1 1 0.857 0.341 0.128 0.050 0.004 0.004 chr11 65782063 65802214
view OVOL2 192 60 52 36 0 0 0.744 0.233 0.202 0.140 0.000 0.000 chr20 18019163 18062916
view OVOL3 224 80 30 22 1 0 0.868 0.310 0.116 0.085 0.004 0.000 chr19 36106143 36118711
view OXA1L 234 86 23 18 0 0 0.907 0.333 0.089 0.070 0.000 0.000 chr14 22761688 22778042
view OXCT1 99 10 135 82 0 0 0.384 0.039 0.523 0.318 0.000 0.000 chr5 41725065 41875425
view OXCT2 226 90 31 15 1 0 0.876 0.349 0.120 0.058 0.004 0.000 chr1 39764523 39776348
view OXER1 212 73 45 31 0 0 0.822 0.283 0.174 0.120 0.000 0.000 chr2 42757499 42769135
view OXGR1 230 87 26 17 1 1 0.891 0.337 0.101 0.066 0.004 0.004 chr13 96980713 96999476
view OXLD1 200 67 51 32 1 0 0.775 0.260 0.198 0.124 0.004 0.000 chr17 81660036 81671605
view OXNAD1 191 70 58 33 0 0 0.740 0.271 0.225 0.128 0.000 0.000 chr3 16260212 16311087