Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PACS1 160 55 69 36 0 0 0.620 0.213 0.267 0.140 0.000 0.000 chr11 66065272 66249744
view PACS2 104 17 117 73 0 0 0.403 0.066 0.453 0.283 0.000 0.000 chr14 105309748 105403147
view PACSIN1 154 42 71 42 0 0 0.597 0.163 0.275 0.163 0.000 0.000 chr6 34461076 34540223
view PACSIN2 146 32 86 54 0 0 0.566 0.124 0.333 0.209 0.000 0.000 chr22 42864773 43020149
view PACSIN3 181 50 69 50 0 0 0.702 0.194 0.267 0.194 0.000 0.000 chr11 47172522 47191434
view PADI1 202 60 41 32 0 0 0.783 0.233 0.159 0.124 0.000 0.000 chr1 17200128 17251007
view PADI2 177 56 54 32 0 0 0.686 0.217 0.209 0.124 0.000 0.000 chr1 17061761 17124451
view PADI3 183 54 60 42 0 0 0.709 0.209 0.233 0.163 0.000 0.000 chr1 17244098 17289233
view PADI4 185 54 49 34 0 0 0.717 0.209 0.190 0.132 0.000 0.000 chr1 17303197 17369004
view PADI6 205 63 35 26 0 0 0.795 0.244 0.136 0.101 0.000 0.000 chr1 17367196 17406699
view PAEP 231 83 23 18 0 0 0.895 0.322 0.089 0.070 0.000 0.000 chr9 135556756 135571955
view PAF1 183 52 70 48 0 0 0.709 0.202 0.271 0.186 0.000 0.000 chr19 39380629 39396106
view PAFAH1B1 139 32 84 53 0 0 0.539 0.124 0.326 0.205 0.000 0.000 chr17 2588654 2690615
view PAFAH1B2 215 76 34 21 0 0 0.833 0.295 0.132 0.081 0.000 0.000 chr11 117139287 117176045
view PAFAH1B3 158 36 94 63 0 0 0.612 0.140 0.364 0.244 0.000 0.000 chr19 42292035 42307624
view PAFAH2 155 37 86 56 0 0 0.601 0.143 0.333 0.217 0.000 0.000 chr1 25954767 26003063
view PAG1 127 30 83 46 0 0 0.492 0.116 0.322 0.178 0.000 0.000 chr8 80962810 81117068
view PAGE1 97 36 156 64 0 0 0.376 0.140 0.605 0.248 0.000 0.000 chrX 49682447 49700984
view PAGE2B 100 33 153 70 2 0 0.388 0.128 0.593 0.271 0.008 0.000 chrX 55070030 55083909
view PAGE2 97 29 155 74 0 0 0.376 0.112 0.601 0.287 0.000 0.000 chrX 55084018 55097842
view PAGE3 102 36 155 68 0 0 0.395 0.140 0.601 0.264 0.000 0.000 chrX 55253415 55269916
view PAGE4 80 22 177 82 0 0 0.310 0.085 0.686 0.318 0.000 0.000 chrX 49824303 49839264
view PAGE5 87 26 170 78 0 0 0.337 0.101 0.659 0.302 0.000 0.000 chrX 55215346 55229108
view PAGR1 163 60 87 39 1 0 0.632 0.233 0.337 0.151 0.004 0.000 chr16 29811152 29827489
view PAH 156 37 77 54 0 0 0.605 0.143 0.298 0.209 0.000 0.000 chr12 102831889 102922244
view PAICS 189 74 63 30 0 0 0.733 0.287 0.244 0.116 0.000 0.000 chr4 56431260 56469578
view PAIP1 174 51 75 46 1 1 0.674 0.198 0.291 0.178 0.004 0.004 chr5 43521267 43562077
view PAIP2B 188 59 58 39 0 0 0.729 0.229 0.225 0.151 0.000 0.000 chr2 71177738 71232103
view PAIP2 171 57 80 44 0 0 0.663 0.221 0.310 0.171 0.000 0.000 chr5 139336854 139374717
view PAK1IP1 127 17 119 77 0 0 0.492 0.066 0.461 0.298 0.000 0.000 chr6 10689972 10714782
view PAK1 150 52 90 44 0 0 0.581 0.202 0.349 0.171 0.000 0.000 chr11 77317017 77479094
view PAK2 88 16 107 55 0 0 0.341 0.062 0.415 0.213 0.000 0.000 chr3 196734857 196837647
view PAK3 31 0 216 101 0 0 0.120 0.000 0.837 0.391 0.000 0.000 chrX 111091191 111232361
view PAK4 183 53 53 37 0 0 0.709 0.205 0.205 0.143 0.000 0.000 chr19 39120786 39184404
view PAK5 103 22 74 45 0 0 0.399 0.085 0.287 0.174 0.000 0.000 chr20 9532370 9844076
view PAK6 212 72 39 26 0 0 0.822 0.279 0.151 0.101 0.000 0.000 chr15 40234063 40282487
view PALB2 162 56 79 39 0 0 0.628 0.217 0.306 0.151 0.000 0.000 chr16 23598165 23646310
view PALD1 153 32 65 40 0 0 0.593 0.124 0.252 0.155 0.000 0.000 chr10 70473767 70573450
view PALLD 77 13 84 51 0 0 0.298 0.050 0.326 0.198 0.000 0.000 chr4 168492052 168933441
view PALM2AKAP2 110 27 67 38 0 0 0.426 0.105 0.260 0.147 0.000 0.000 chr9 109775198 110177512
view PALM3 218 72 38 31 0 0 0.845 0.279 0.147 0.120 0.000 0.000 chr19 14048367 14067076
view PALMD 189 61 56 32 0 0 0.733 0.236 0.217 0.124 0.000 0.000 chr1 99641113 99699535
view PALM 201 60 40 29 0 0 0.779 0.233 0.155 0.112 0.000 0.000 chr19 703935 753329
view PALS1 144 47 94 49 0 0 0.558 0.182 0.364 0.190 0.000 0.000 chr14 67236435 67341061
view PALS2 188 68 53 32 0 0 0.729 0.264 0.205 0.124 0.000 0.000 chr7 24568452 24699193
view PAM16 183 46 63 47 0 0 0.709 0.178 0.244 0.182 0.000 0.000 chr16 4335251 4356321
view PAMR1 188 68 45 29 0 0 0.729 0.264 0.174 0.112 0.000 0.000 chr11 35426827 35530616
view PAM 93 25 100 47 0 0 0.360 0.097 0.388 0.182 0.000 0.000 chr5 102750305 103034716
view PAN2 167 59 79 39 0 0 0.647 0.229 0.306 0.151 0.000 0.000 chr12 56311936 56339000
view PAN3 125 40 108 51 0 0 0.484 0.155 0.419 0.198 0.000 0.000 chr13 28133545 28300335