Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PCDH18 202 68 53 35 0 0 0.783 0.264 0.205 0.136 0.000 0.000 chr4 137513918 137537494
view PCDH19 77 14 166 83 0 0 0.298 0.054 0.643 0.322 0.000 0.000 chrX 100286644 100415273
view PCDH1 191 54 53 38 0 0 0.740 0.209 0.205 0.147 0.000 0.000 chr5 141848090 141883410
view PCDH20 228 89 30 16 0 0 0.884 0.345 0.116 0.062 0.000 0.000 chr13 61404685 61420849
view PCDH7 107 35 83 36 0 0 0.415 0.136 0.322 0.140 0.000 0.000 chr4 30715369 31151800
view PCDH8 213 74 41 28 1 0 0.826 0.287 0.159 0.109 0.004 0.000 chr13 52837889 52853640
view PCDH9 40 2 107 56 0 0 0.155 0.008 0.415 0.217 0.000 0.000 chr13 66297834 67235336
view PCDHA10 129 35 88 48 0 0 0.500 0.136 0.341 0.186 0.000 0.000 chr5 140850897 141017347
view PCDHA11 129 35 89 50 0 0 0.500 0.136 0.345 0.194 0.000 0.000 chr5 140863957 141017347
view PCDHA12 129 36 91 51 0 0 0.500 0.140 0.353 0.198 0.000 0.000 chr5 140870308 141017347
view PCDHA13 129 35 92 50 0 0 0.500 0.136 0.357 0.194 0.000 0.000 chr5 140877124 141017347
view PCDHA1 99 23 110 58 0 0 0.384 0.089 0.426 0.225 0.000 0.000 chr5 140781140 141017347
view PCDHA2 100 23 110 59 0 0 0.388 0.089 0.426 0.229 0.000 0.000 chr5 140789852 141017347
view PCDHA3 103 24 104 56 0 0 0.399 0.093 0.403 0.217 0.000 0.000 chr5 140796057 141017347
view PCDHA4 105 24 103 57 0 0 0.407 0.093 0.399 0.221 0.000 0.000 chr5 140802068 141017347
view PCDHA5 109 26 102 55 0 0 0.422 0.101 0.395 0.213 0.000 0.000 chr5 140816613 141017347
view PCDHA6 117 27 93 54 0 0 0.453 0.105 0.360 0.209 0.000 0.000 chr5 140822960 141017347
view PCDHA7 123 31 87 51 0 0 0.477 0.120 0.337 0.198 0.000 0.000 chr5 140829269 141017347
view PCDHA8 128 34 91 53 0 0 0.496 0.132 0.353 0.205 0.000 0.000 chr5 140836187 141017347
view PCDHA9 127 35 91 49 0 0 0.492 0.136 0.353 0.190 0.000 0.000 chr5 140843382 141017347
view PCDHAC1 139 39 79 44 0 0 0.539 0.151 0.306 0.171 0.000 0.000 chr5 140921299 141017347
view PCDHAC2 161 45 72 42 0 0 0.624 0.174 0.279 0.163 0.000 0.000 chr5 140961476 141017347
view PCDHB10 227 85 31 20 0 0 0.880 0.329 0.120 0.078 0.000 0.000 chr5 141187353 141200647
view PCDHB11 221 83 34 21 0 0 0.857 0.322 0.132 0.081 0.000 0.000 chr5 141194627 141208779
view PCDHB12 215 76 43 29 0 0 0.833 0.295 0.167 0.112 0.000 0.000 chr5 141203719 141217571
view PCDHB13 213 76 42 26 0 0 0.826 0.295 0.163 0.101 0.000 0.000 chr5 141208919 141223979
view PCDHB14 223 82 32 20 0 0 0.864 0.318 0.124 0.078 0.000 0.000 chr5 141218343 141232759
view PCDHB15 210 73 46 30 0 0 0.814 0.283 0.178 0.116 0.000 0.000 chr5 141240395 141254365
view PCDHB16 225 86 30 17 0 0 0.872 0.333 0.116 0.066 0.000 0.000 chr5 141177387 141191226
view PCDHB1 210 75 46 28 0 0 0.814 0.291 0.178 0.109 0.000 0.000 chr5 141046374 141064346
view PCDHB2 208 74 49 30 0 0 0.806 0.287 0.190 0.116 0.000 0.000 chr5 141089615 141103703
view PCDHB3 211 77 44 26 0 0 0.818 0.298 0.171 0.101 0.000 0.000 chr5 141095473 141108827
view PCDHB4 221 83 35 20 1 1 0.857 0.322 0.136 0.078 0.004 0.004 chr5 141116818 141130623
view PCDHB5 234 89 21 13 2 2 0.907 0.345 0.081 0.050 0.008 0.008 chr5 141130206 141143615
view PCDHB6 231 92 26 12 0 0 0.895 0.357 0.101 0.047 0.000 0.000 chr5 141145057 141158287
view PCDHB7 207 73 47 29 1 0 0.802 0.283 0.182 0.112 0.004 0.000 chr5 141167644 141181383
view PCDHB8 206 78 44 23 1 0 0.798 0.302 0.171 0.089 0.004 0.000 chr5 141172790 141185539
view PCDHB9 228 87 29 17 1 1 0.884 0.337 0.112 0.066 0.004 0.004 chr5 141182161 141196541
view PCDHGA10 152 43 91 56 0 0 0.589 0.167 0.353 0.217 0.000 0.000 chr5 141407987 141517975
view PCDHGA11 154 42 90 57 0 0 0.597 0.163 0.349 0.221 0.000 0.000 chr5 141416051 141517975
view PCDHGA12 158 42 87 57 0 0 0.612 0.163 0.337 0.221 0.000 0.000 chr5 141425507 141517975
view PCDHGA1 133 31 93 61 0 0 0.516 0.120 0.360 0.236 0.000 0.000 chr5 141325514 141517975
view PCDHGA2 135 33 93 61 0 0 0.523 0.128 0.360 0.236 0.000 0.000 chr5 141333760 141517975
view PCDHGA3 134 33 97 62 0 0 0.519 0.128 0.376 0.240 0.000 0.000 chr5 141338829 141517975
view PCDHGA4 136 34 93 57 0 0 0.527 0.132 0.360 0.221 0.000 0.000 chr5 141350021 141517975
view PCDHGA5 145 38 90 56 0 0 0.562 0.147 0.349 0.217 0.000 0.000 chr5 141359162 141517975
view PCDHGA6 145 41 92 55 0 0 0.562 0.159 0.357 0.213 0.000 0.000 chr5 141368891 141517975
view PCDHGA7 145 40 91 55 0 0 0.562 0.155 0.353 0.213 0.000 0.000 chr5 141377742 141517975
view PCDHGA8 150 42 89 53 0 0 0.581 0.163 0.345 0.205 0.000 0.000 chr5 141387633 141517975
view PCDHGA9 150 41 91 56 0 0 0.581 0.159 0.353 0.217 0.000 0.000 chr5 141397778 141517975