Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PCYOX1 211 78 43 24 0 0 0.818 0.302 0.167 0.093 0.000 0.000 chr2 70253137 70286185
view PCYT1A 154 35 89 61 0 0 0.597 0.136 0.345 0.236 0.000 0.000 chr3 196229368 196292726
view PCYT1B 66 15 168 75 1 1 0.256 0.058 0.651 0.291 0.004 0.004 chrX 24553087 24652347
view PCYT2 149 34 95 60 0 0 0.578 0.132 0.368 0.233 0.000 0.000 chr17 81895958 81916399
view PC 136 50 90 37 0 0 0.527 0.194 0.349 0.143 0.000 0.000 chr11 66843420 66963383
view PDAP1 166 58 86 43 0 0 0.643 0.225 0.333 0.167 0.000 0.000 chr7 99389673 99413597
view PDCD10 141 55 102 43 0 0 0.547 0.213 0.395 0.167 0.000 0.000 chr3 167678298 167739892
view PDCD11 180 64 67 38 0 0 0.698 0.248 0.260 0.147 0.000 0.000 chr10 103391626 103451294
view PDCD1LG2 202 73 38 21 0 0 0.783 0.283 0.147 0.081 0.000 0.000 chr9 5505531 5576282
view PDCD1 203 66 48 32 0 0 0.787 0.256 0.186 0.124 0.000 0.000 chr2 241844884 241863894
view PDCD2L 190 60 55 34 0 0 0.736 0.233 0.213 0.132 0.000 0.000 chr19 34399399 34431168
view PDCD2 185 58 70 45 0 0 0.717 0.225 0.271 0.174 0.000 0.000 chr6 170570295 170589637
view PDCD4 209 82 44 21 0 0 0.810 0.318 0.171 0.081 0.000 0.000 chr10 110866928 110905006
view PDCD5 210 76 46 28 0 0 0.814 0.295 0.178 0.109 0.000 0.000 chr19 32576190 32592453
view PDCD6IP 158 55 75 40 0 0 0.612 0.213 0.291 0.155 0.000 0.000 chr3 33793630 33874703
view PDCD6 179 52 55 31 0 0 0.694 0.202 0.213 0.120 0.000 0.000 chr5 266646 319974
view PDCD7 108 19 134 73 0 0 0.419 0.074 0.519 0.283 0.000 0.000 chr15 65112379 65138808
view PDCL2 187 64 65 38 0 0 0.725 0.248 0.252 0.147 0.000 0.000 chr4 55551519 55597245
view PDCL3 197 61 54 37 0 0 0.764 0.236 0.209 0.143 0.000 0.000 chr2 100557993 100581739
view PDCL 210 74 41 27 0 0 0.814 0.287 0.159 0.105 0.000 0.000 chr9 122813097 122833588
view PDC 201 74 52 28 0 0 0.779 0.287 0.202 0.109 0.000 0.000 chr1 186438566 186466114
view PDE10A 110 17 62 40 0 0 0.426 0.066 0.240 0.155 0.000 0.000 chr6 165322289 165668241
view PDE11A 84 10 103 55 0 0 0.326 0.039 0.399 0.213 0.000 0.000 chr2 177618244 178077777
view PDE12 193 64 58 35 0 0 0.748 0.248 0.225 0.136 0.000 0.000 chr3 57551274 57571848
view PDE1A 131 42 74 43 0 0 0.508 0.163 0.287 0.167 0.000 0.000 chr2 182135041 182432036
view PDE1B 214 74 34 23 0 0 0.829 0.287 0.132 0.089 0.000 0.000 chr12 54544601 54584239
view PDE1C 130 31 65 42 0 0 0.504 0.120 0.252 0.163 0.000 0.000 chr7 31746179 32075407
view PDE2A 145 35 82 53 0 0 0.562 0.136 0.318 0.205 0.000 0.000 chr11 72571141 72679422
view PDE3A 98 14 77 47 0 0 0.380 0.054 0.298 0.182 0.000 0.000 chr12 20363537 20693583
view PDE3B 165 59 79 40 0 0 0.640 0.229 0.306 0.155 0.000 0.000 chr11 14638804 14877044
view PDE4A 160 50 73 42 0 0 0.620 0.194 0.283 0.163 0.000 0.000 chr19 10415538 10474630
view PDE4B 59 8 118 66 0 0 0.229 0.031 0.457 0.256 0.000 0.000 chr1 65787895 66379574
view PDE4C 196 66 51 32 0 0 0.760 0.256 0.198 0.124 0.000 0.000 chr19 18202965 18231438
view PDE4DIP 11 0 81 6 0 0 0.043 0.000 0.314 0.023 0.000 0.000 chr1 148839428 149038016
view PDE4D 37 3 105 52 0 0 0.143 0.012 0.407 0.202 0.000 0.000 chr5 58964038 59898726
view PDE5A 167 54 80 46 0 0 0.647 0.209 0.310 0.178 0.000 0.000 chr4 119489403 119633804
view PDE6A 163 42 65 43 0 0 0.632 0.163 0.252 0.167 0.000 0.000 chr5 149852953 149949793
view PDE6B 153 45 76 42 0 0 0.593 0.174 0.295 0.163 0.000 0.000 chr4 620573 675782
view PDE6C 191 64 53 32 0 0 0.740 0.248 0.205 0.124 0.000 0.000 chr10 93607537 93671010
view PDE6D 132 18 101 69 0 0 0.512 0.070 0.391 0.267 0.000 0.000 chr2 231727433 231786282
view PDE6G 216 75 38 27 1 0 0.837 0.291 0.147 0.105 0.004 0.000 chr17 81645459 81661542
view PDE6H 223 90 31 13 1 0 0.864 0.349 0.120 0.050 0.004 0.000 chr12 14968042 14986865
view PDE7A 123 26 107 65 0 0 0.477 0.101 0.415 0.252 0.000 0.000 chr8 65709334 65847064
view PDE7B 70 12 105 50 0 0 0.271 0.047 0.407 0.194 0.000 0.000 chr6 135846701 136200574
view PDE8A 171 53 65 36 0 0 0.663 0.205 0.252 0.140 0.000 0.000 chr15 84976856 85144142
view PDE8B 156 49 52 35 0 0 0.605 0.190 0.202 0.136 0.000 0.000 chr5 77205680 77433256
view PDE9A 161 43 51 34 0 0 0.624 0.167 0.198 0.132 0.000 0.000 chr21 42648621 42780509
view PDF 181 47 75 56 0 0 0.702 0.182 0.291 0.217 0.000 0.000 chr16 69321913 69335588
view PDGFA 150 43 71 33 0 0 0.581 0.167 0.275 0.128 0.000 0.000 chr7 492258 524846
view PDGFB 192 54 54 40 0 0 0.744 0.209 0.209 0.155 0.000 0.000 chr22 39218359 39249982