Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PFDN2 184 72 69 29 0 0 0.713 0.279 0.267 0.112 0.000 0.000 chr1 161095561 161123037
view PFDN4 218 79 38 24 0 0 0.845 0.306 0.147 0.093 0.000 0.000 chr20 54203087 54224961
view PFDN5 190 68 63 32 0 0 0.736 0.264 0.244 0.124 0.000 0.000 chr12 53290542 53304450
view PFDN6 199 64 56 38 0 0 0.771 0.248 0.217 0.147 0.000 0.000 chr6 33284601 33295933
view PFKFB1 45 2 193 93 0 0 0.174 0.008 0.748 0.360 0.000 0.000 chrX 54927961 54999188
view PFKFB2 170 42 81 60 0 0 0.659 0.163 0.314 0.233 0.000 0.000 chr1 207048275 207082817
view PFKFB3 215 69 31 24 0 0 0.833 0.267 0.120 0.093 0.000 0.000 chr10 6197932 6240532
view PFKFB4 122 36 109 53 0 0 0.473 0.140 0.422 0.205 0.000 0.000 chr3 48512684 48561803
view PFKL 195 56 42 31 0 0 0.756 0.217 0.163 0.120 0.000 0.000 chr21 44295053 44332373
view PFKM 205 73 48 28 0 0 0.795 0.283 0.186 0.109 0.000 0.000 chr12 48114364 48151404
view PFKP 200 60 35 26 0 0 0.775 0.233 0.136 0.101 0.000 0.000 chr10 3062548 3141802
view PFN1 215 77 36 24 2 0 0.833 0.298 0.140 0.093 0.008 0.000 chr17 4940652 4953530
view PFN2 216 81 41 23 1 1 0.837 0.314 0.159 0.089 0.004 0.004 chr3 149959904 149975895
view PFN3 207 69 47 33 1 0 0.802 0.267 0.182 0.128 0.004 0.000 chr5 177395109 177405661
view PFN4 178 61 76 42 0 0 0.690 0.236 0.295 0.163 0.000 0.000 chr2 24109809 24128334
view PGA3 155 33 86 59 4 1 0.601 0.128 0.333 0.229 0.016 0.004 chr11 61198515 61218098
view PGA4 152 44 92 51 6 5 0.589 0.171 0.357 0.198 0.023 0.019 chr11 61217347 61236694
view PGA5 202 66 54 37 0 0 0.783 0.256 0.209 0.143 0.000 0.000 chr11 61236175 61256444
view PGAM1 218 81 34 20 1 0 0.845 0.314 0.132 0.078 0.004 0.000 chr10 97421191 97438444
view PGAM2 199 65 58 39 0 0 0.771 0.252 0.225 0.151 0.000 0.000 chr7 44057727 44070567
view PGAM4 96 29 156 70 0 0 0.372 0.112 0.605 0.271 0.000 0.000 chrX 77962949 77974638
view PGAM5 196 57 51 37 0 0 0.760 0.221 0.198 0.143 0.000 0.000 chr12 132705842 132727734
view PGAP1 93 18 150 81 0 0 0.360 0.070 0.581 0.314 0.000 0.000 chr2 196828004 196931707
view PGAP2 208 66 40 30 0 0 0.806 0.256 0.155 0.116 0.000 0.000 chr11 3803560 3831371
view PGAP3 187 57 61 41 0 0 0.725 0.221 0.236 0.159 0.000 0.000 chr17 39666122 39693057
view PGAP4 229 87 24 14 0 0 0.888 0.337 0.093 0.054 0.000 0.000 chr9 101468170 101492173
view PGAP6 187 46 51 41 0 0 0.725 0.178 0.198 0.159 0.000 0.000 chr16 365788 386978
view PGBD1 203 74 51 30 0 0 0.787 0.287 0.198 0.116 0.000 0.000 chr6 28276572 28307549
view PGBD2 210 80 46 24 1 1 0.814 0.310 0.178 0.093 0.004 0.004 chr1 248901235 248924146
view PGBD4 199 68 53 35 1 0 0.771 0.264 0.205 0.136 0.004 0.000 chr15 34097083 34113686
view PGBD5 143 37 74 45 0 0 0.554 0.143 0.287 0.174 0.000 0.000 chr1 230309490 230431332
view PGC 231 79 24 23 0 0 0.895 0.306 0.093 0.089 0.000 0.000 chr6 41731711 41752397
view PGD 196 65 53 33 0 0 0.760 0.252 0.205 0.128 0.000 0.000 chr1 10394064 10425511
view PGF 202 68 50 32 0 0 0.783 0.264 0.194 0.124 0.000 0.000 chr14 74936834 74960597
view PGGHG 224 81 30 21 1 0 0.868 0.314 0.116 0.081 0.004 0.000 chr11 284126 301107
view PGGT1B 185 59 65 41 0 0 0.717 0.229 0.252 0.159 0.000 0.000 chr5 115199012 115267877
view PGK1 90 30 167 74 0 0 0.349 0.116 0.647 0.287 0.000 0.000 chrX 78099248 78134295
view PGK2 202 65 54 39 0 0 0.783 0.252 0.209 0.151 0.000 0.000 chr6 49780660 49792285
view PGLS 220 76 31 22 0 0 0.853 0.295 0.120 0.085 0.000 0.000 chr19 17506649 17526288
view PGLYRP1 227 86 30 19 0 0 0.880 0.333 0.116 0.074 0.000 0.000 chr19 46014153 46028053
view PGLYRP2 190 53 55 40 0 0 0.736 0.205 0.213 0.155 0.000 0.000 chr19 15463645 15484501
view PGLYRP3 216 76 38 26 1 1 0.837 0.295 0.147 0.101 0.004 0.004 chr1 153292116 153317952
view PGLYRP4 195 71 54 30 0 0 0.756 0.275 0.209 0.116 0.000 0.000 chr1 153325120 153353841
view PGM1 182 62 47 23 0 0 0.705 0.240 0.182 0.089 0.000 0.000 chr1 63588411 63665245
view PGM2L1 189 71 57 28 0 0 0.733 0.275 0.221 0.109 0.000 0.000 chr11 74325316 74403433
view PGM2 222 90 31 11 1 1 0.860 0.349 0.120 0.043 0.004 0.004 chr4 37821686 37867937
view PGM3 171 52 81 49 0 0 0.663 0.202 0.314 0.190 0.000 0.000 chr6 83159873 83198265
view PGM5 122 31 89 48 0 0 0.473 0.120 0.345 0.186 0.000 0.000 chr9 68351611 68536061
view PGPEP1L 198 63 49 33 0 0 0.767 0.244 0.190 0.128 0.000 0.000 chr15 98963229 99012792
view PGPEP1 205 62 45 36 0 0 0.795 0.240 0.174 0.140 0.000 0.000 chr19 18335598 18374950