Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PIGN 170 53 67 42 0 0 0.659 0.205 0.260 0.163 0.000 0.000 chr18 62036164 62192056
view PIGO 212 81 45 24 1 0 0.822 0.314 0.174 0.093 0.004 0.000 chr9 35083688 35101591
view PIGP 217 77 38 26 2 1 0.841 0.298 0.147 0.101 0.008 0.004 chr21 37060374 37078071
view PIGQ 203 61 46 35 0 0 0.787 0.236 0.178 0.136 0.000 0.000 chr16 564968 589109
view PIGR 200 72 53 29 0 0 0.775 0.279 0.205 0.112 0.000 0.000 chr1 206923522 206951466
view PIGS 164 56 86 44 0 0 0.636 0.217 0.333 0.171 0.000 0.000 chr17 28548387 28576524
view PIGT 230 87 27 17 0 0 0.891 0.337 0.105 0.066 0.000 0.000 chr20 45411141 45431241
view PIGU 159 56 81 41 0 0 0.616 0.217 0.314 0.159 0.000 0.000 chr20 34555542 34682092
view PIGV 140 35 108 65 0 0 0.543 0.136 0.419 0.252 0.000 0.000 chr1 26782950 26805659
view PIGW 201 73 53 29 0 0 0.779 0.283 0.205 0.112 0.000 0.000 chr17 36529987 36544303
view PIGX 207 72 43 29 0 0 0.802 0.279 0.167 0.112 0.000 0.000 chr3 196707377 196741007
view PIGY 222 80 33 22 0 0 0.860 0.310 0.128 0.085 0.000 0.000 chr4 88515998 88528776
view PIGZ 211 72 40 26 1 1 0.818 0.279 0.155 0.101 0.004 0.004 chr3 196941356 196973833
view PIH1D1 182 54 70 46 0 0 0.705 0.209 0.271 0.178 0.000 0.000 chr19 49441298 49456814
view PIH1D2 191 64 59 36 0 0 0.740 0.248 0.229 0.140 0.000 0.000 chr11 112062798 112079017
view PIK3AP1 127 31 76 45 0 0 0.492 0.120 0.295 0.174 0.000 0.000 chr10 96588315 96725514
view PIK3C2A 170 57 76 43 0 0 0.659 0.221 0.295 0.167 0.000 0.000 chr11 17081575 17212986
view PIK3C2B 150 49 80 47 0 0 0.581 0.190 0.310 0.182 0.000 0.000 chr1 204417633 204499805
view PIK3C2G 87 17 84 52 0 0 0.337 0.066 0.326 0.202 0.000 0.000 chr12 18256518 18653416
view PIK3C3 169 61 80 40 0 0 0.655 0.236 0.310 0.155 0.000 0.000 chr18 41950234 42092830
view PIK3CA 140 32 100 68 0 0 0.543 0.124 0.388 0.264 0.000 0.000 chr3 179143357 179245093
view PIK3CB 102 11 118 68 0 0 0.395 0.043 0.457 0.264 0.000 0.000 chr3 138647698 138839928
view PIK3CD 158 41 68 45 0 0 0.612 0.159 0.264 0.174 0.000 0.000 chr1 9646731 9734114
view PIK3CG 188 64 63 37 0 0 0.729 0.248 0.244 0.143 0.000 0.000 chr7 106860282 106913980
view PIK3IP1 210 83 43 18 0 0 0.814 0.322 0.167 0.070 0.000 0.000 chr22 31276600 31297488
view PIK3R1 153 37 66 44 0 0 0.593 0.143 0.256 0.171 0.000 0.000 chr5 68210756 68306821
view PIK3R2 166 43 79 50 0 0 0.643 0.167 0.306 0.194 0.000 0.000 chr19 18148163 18175532
view PIK3R3 158 43 71 45 0 0 0.612 0.167 0.275 0.174 0.000 0.000 chr1 46035140 46137629
view PIK3R4 151 57 84 34 0 0 0.585 0.221 0.326 0.132 0.000 0.000 chr3 130673934 130751829
view PIK3R5 148 38 71 38 0 0 0.574 0.147 0.275 0.147 0.000 0.000 chr17 8873916 8970707
view PIK3R6 176 50 44 29 0 0 0.682 0.194 0.171 0.112 0.000 0.000 chr17 8797722 8872674
view PIKFYVE 143 29 92 56 0 0 0.554 0.112 0.357 0.217 0.000 0.000 chr2 208261255 208363746
view PILRA 181 55 56 35 0 0 0.702 0.213 0.217 0.136 0.000 0.000 chr7 100368487 100405096
view PILRB 190 59 59 39 1 0 0.736 0.229 0.229 0.151 0.004 0.000 chr7 100353117 100372831
view PIM1 206 69 45 30 0 0 0.798 0.267 0.174 0.116 0.000 0.000 chr6 37165152 37180428
view PIM2 76 17 178 86 0 0 0.295 0.066 0.690 0.333 0.000 0.000 chrX 48908182 48924024
view PIM3 212 68 40 33 0 0 0.822 0.264 0.155 0.128 0.000 0.000 chr22 49955772 49969072
view PIMREG 155 39 87 52 1 1 0.601 0.151 0.337 0.202 0.004 0.004 chr17 6439455 6456469
view PIN1 210 70 48 35 0 0 0.814 0.271 0.186 0.136 0.000 0.000 chr19 9830318 9854689
view PIN4 88 32 167 72 0 0 0.341 0.124 0.647 0.279 0.000 0.000 chrX 72176757 72203340
view PINK1 228 84 27 18 0 0 0.884 0.326 0.105 0.070 0.000 0.000 chr1 20628458 20656511
view PINLYP 224 81 30 20 0 0 0.868 0.314 0.116 0.078 0.000 0.000 chr19 43570801 43587098
view PINX1 176 53 71 46 0 0 0.682 0.205 0.275 0.178 0.000 0.000 chr8 10759961 10844875
view PIP4K2A 102 9 120 75 0 0 0.395 0.035 0.465 0.291 0.000 0.000 chr10 22529854 22719578
view PIP4K2B 189 70 55 27 0 0 0.733 0.271 0.213 0.105 0.000 0.000 chr17 38760691 38804556
view PIP4K2C 192 65 59 36 0 0 0.744 0.252 0.229 0.140 0.000 0.000 chr12 57586192 57608418
view PIP4P1 233 91 22 11 0 0 0.903 0.353 0.085 0.043 0.000 0.000 chr14 20452681 20466434
view PIP4P2 170 58 78 41 0 0 0.659 0.225 0.302 0.159 0.000 0.000 chr8 90988802 91045859
view PIP5K1A 166 52 78 43 0 0 0.643 0.202 0.302 0.167 0.000 0.000 chr1 151193552 151254531
view PIP5K1B 109 30 78 47 0 0 0.422 0.116 0.302 0.182 0.000 0.000 chr9 68700240 69014176