Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PIP5K1C 165 41 67 47 0 0 0.640 0.159 0.260 0.182 0.000 0.000 chr19 3625183 3705468
view PIP5KL1 199 70 56 34 0 0 0.771 0.271 0.217 0.132 0.000 0.000 chr9 127915881 127935777
view PIPOX 197 65 57 37 0 0 0.764 0.252 0.221 0.143 0.000 0.000 chr17 29038141 29062216
view PIP 169 37 81 61 0 0 0.655 0.143 0.314 0.236 0.000 0.000 chr7 143127077 143144739
view PIRT 226 76 27 24 0 0 0.876 0.295 0.105 0.093 0.000 0.000 chr17 10817470 10843087
view PIR 70 18 173 78 0 0 0.271 0.070 0.671 0.302 0.000 0.000 chrX 15379799 15498333
view PISD 163 46 77 47 0 0 0.632 0.178 0.298 0.182 0.000 0.000 chr22 31613491 31667215
view PITHD1 185 61 70 43 0 0 0.717 0.236 0.271 0.167 0.000 0.000 chr1 23773418 23793232
view PITPNA 183 57 54 33 0 0 0.709 0.221 0.209 0.128 0.000 0.000 chr17 1512718 1567792
view PITPNB 182 66 61 33 0 0 0.705 0.256 0.236 0.128 0.000 0.000 chr22 27846669 27924256
view PITPNC1 108 15 82 54 0 0 0.419 0.058 0.318 0.209 0.000 0.000 chr17 67372281 67702256
view PITPNM1 149 32 98 65 0 0 0.578 0.124 0.380 0.252 0.000 0.000 chr11 67486768 67510363
view PITPNM2 114 27 123 63 0 0 0.442 0.105 0.477 0.244 0.000 0.000 chr12 122978480 123156090
view PITPNM3 108 17 85 43 0 0 0.419 0.066 0.329 0.167 0.000 0.000 chr17 6446263 6561555
view PITRM1 222 81 26 18 0 0 0.860 0.314 0.101 0.070 0.000 0.000 chr10 3132728 3177782
view PITX1 201 64 51 36 1 1 0.779 0.248 0.198 0.140 0.004 0.004 chr5 135022734 135039228
view PITX2 210 78 44 25 0 0 0.814 0.302 0.171 0.097 0.000 0.000 chr4 110612423 110628077
view PITX3 204 76 47 24 0 0 0.791 0.295 0.182 0.093 0.000 0.000 chr10 102225189 102246512
view PIWIL1 212 78 37 22 0 0 0.822 0.302 0.143 0.085 0.000 0.000 chr12 130332887 130377637
view PIWIL2 147 41 86 49 0 0 0.570 0.159 0.333 0.190 0.000 0.000 chr8 22270316 22362568
view PIWIL3 192 63 51 32 0 0 0.744 0.244 0.198 0.124 0.000 0.000 chr22 24714034 24779720
view PIWIL4 191 58 51 34 0 0 0.740 0.225 0.198 0.132 0.000 0.000 chr11 94562368 94626421
view PJA1 102 30 153 73 0 0 0.395 0.116 0.593 0.283 0.000 0.000 chrX 69155861 69170453
view PJA2 172 51 65 40 0 0 0.667 0.198 0.252 0.155 0.000 0.000 chr5 109329722 109414974
view PJVK 203 77 51 25 0 0 0.787 0.298 0.198 0.097 0.000 0.000 chr2 178446378 178467102
view PKD1L1 152 39 57 37 0 0 0.589 0.151 0.221 0.143 0.000 0.000 chr7 47769614 47953466
view PKD1L3 153 39 74 45 0 0 0.593 0.151 0.287 0.174 0.000 0.000 chr16 71924538 72005402
view PKD1 107 13 100 47 0 0 0.415 0.050 0.388 0.182 0.000 0.000 chr16 2083708 2140898
view PKD2L1 152 37 82 50 0 0 0.589 0.143 0.318 0.194 0.000 0.000 chr10 100283149 100335228
view PKD2L2 167 45 81 53 0 0 0.647 0.174 0.314 0.205 0.000 0.000 chr5 137884457 137947747
view PKD2 170 66 67 30 0 0 0.659 0.256 0.260 0.116 0.000 0.000 chr4 88002635 88082777
view PKDCC 215 74 39 28 0 0 0.833 0.287 0.151 0.109 0.000 0.000 chr2 42043021 42063517
view PKDREJ 151 29 99 70 0 0 0.585 0.112 0.384 0.271 0.000 0.000 chr22 46250663 46268343
view PKHD1L1 140 32 85 58 0 0 0.543 0.124 0.329 0.225 0.000 0.000 chr8 109357461 109542207
view PKHD1 66 11 107 57 0 0 0.256 0.043 0.415 0.221 0.000 0.000 chr6 51610299 52092613
view PKIA 92 18 139 75 0 0 0.357 0.070 0.539 0.291 0.000 0.000 chr8 78511340 78610267
view PKIB 155 46 65 38 0 0 0.601 0.178 0.252 0.147 0.000 0.000 chr6 122605405 122731373
view PKIG 149 32 86 56 0 0 0.578 0.124 0.333 0.217 0.000 0.000 chr20 44577579 44624037
view PKLR 155 45 93 53 0 0 0.601 0.174 0.360 0.205 0.000 0.000 chr1 155284293 155306438
view PKMYT1 195 65 59 37 0 0 0.756 0.252 0.229 0.143 0.000 0.000 chr16 2967808 2985446
view PKM 184 62 65 36 0 0 0.713 0.240 0.252 0.140 0.000 0.000 chr15 72194029 72236190
view PKN1 187 52 53 39 0 0 0.725 0.202 0.205 0.151 0.000 0.000 chr19 14428306 14476859
view PKN2 164 65 76 33 0 0 0.636 0.252 0.295 0.128 0.000 0.000 chr1 88679273 88841255
view PKN3 179 53 70 43 0 0 0.694 0.205 0.271 0.167 0.000 0.000 chr9 128697503 128725916
view PKNOX1 180 57 62 42 0 0 0.698 0.221 0.240 0.163 0.000 0.000 chr21 42969562 43038931
view PKNOX2 110 22 75 46 0 0 0.426 0.085 0.291 0.178 0.000 0.000 chr11 125159751 125438389
view PKP1 166 49 78 47 0 0 0.643 0.190 0.302 0.182 0.000 0.000 chr1 201278506 201337989
view PKP2 170 46 56 39 0 0 0.659 0.178 0.217 0.151 0.000 0.000 chr12 32785755 32901777
view PKP3 107 23 102 49 0 0 0.415 0.089 0.395 0.190 0.000 0.000 chr11 389209 409908
view PKP4 153 48 79 39 0 0 0.593 0.186 0.306 0.151 0.000 0.000 chr2 158451952 158686429