Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PHLDB2 142 33 85 56 0 0 0.550 0.128 0.329 0.217 0.000 0.000 chr3 111854265 111981517
view PHLDB3 197 65 50 30 0 0 0.764 0.252 0.194 0.116 0.000 0.000 chr19 43470103 43509746
view PHLPP1 95 19 95 51 0 0 0.368 0.074 0.368 0.198 0.000 0.000 chr18 62710541 62985433
view PHLPP2 161 45 84 53 0 0 0.624 0.174 0.326 0.205 0.000 0.000 chr16 71639924 71729701
view PHOSPHO1 209 67 45 35 0 0 0.810 0.260 0.174 0.136 0.000 0.000 chr17 49218366 49235787
view PHOSPHO2 217 87 40 17 0 0 0.841 0.337 0.155 0.066 0.000 0.000 chr2 169689469 169706708
view PHOX2A 182 54 74 50 0 0 0.705 0.209 0.287 0.194 0.000 0.000 chr11 72234077 72249176
view PHOX2B 190 65 67 40 1 0 0.736 0.252 0.260 0.155 0.004 0.000 chr4 41739082 41753725
view PHPT1 171 39 78 57 0 0 0.663 0.151 0.302 0.221 0.000 0.000 chr9 136844409 136856024
view PHRF1 139 27 82 49 0 0 0.539 0.105 0.318 0.190 0.000 0.000 chr11 571470 617222
view PHTF1 164 60 77 41 0 0 0.636 0.233 0.298 0.159 0.000 0.000 chr1 113691831 113764486
view PHTF2 156 42 80 49 0 0 0.605 0.163 0.310 0.190 0.000 0.000 chr7 77793773 77962225
view PHYHD1 201 64 49 35 0 0 0.779 0.248 0.190 0.136 0.000 0.000 chr9 128915982 128947038
view PHYHIPL 101 26 129 66 0 0 0.391 0.101 0.500 0.256 0.000 0.000 chr10 59171643 59252770
view PHYHIP 217 74 37 27 0 0 0.841 0.287 0.143 0.105 0.000 0.000 chr8 22214703 22237099
view PHYH 218 78 31 21 1 1 0.845 0.302 0.120 0.081 0.004 0.004 chr10 13272799 13305064
view PHYKPL 219 77 30 19 0 0 0.849 0.298 0.116 0.074 0.000 0.000 chr5 178203471 178237802
view PI15 168 46 79 51 0 0 0.651 0.178 0.306 0.198 0.000 0.000 chr8 74819534 74860029
view PI16 212 78 41 22 0 0 0.822 0.302 0.159 0.085 0.000 0.000 chr6 36949738 36969837
view PI3 212 79 44 26 1 0 0.822 0.306 0.171 0.101 0.004 0.000 chr20 45169902 45181544
view PI4K2A 174 52 66 42 0 0 0.674 0.202 0.256 0.163 0.000 0.000 chr10 97635671 97681434
view PI4K2B 217 79 36 22 0 0 0.841 0.306 0.140 0.085 0.000 0.000 chr4 25229033 25284204
view PI4KA 166 50 72 43 0 0 0.643 0.194 0.279 0.167 0.000 0.000 chr22 20702691 20863811
view PI4KB 164 54 84 45 0 0 0.636 0.209 0.326 0.174 0.000 0.000 chr1 151286804 151332416
view PIANP 168 31 84 69 0 0 0.651 0.120 0.326 0.267 0.000 0.000 chr12 6688791 6705815
view PIAS1 129 25 106 69 0 0 0.500 0.097 0.411 0.267 0.000 0.000 chr15 68049315 68198847
view PIAS2 160 50 77 45 0 0 0.620 0.194 0.298 0.174 0.000 0.000 chr18 46798218 46922507
view PIAS3 183 53 72 50 1 0 0.709 0.205 0.279 0.194 0.004 0.000 chr1 145843522 145864081
view PIAS4 166 28 60 48 0 0 0.643 0.109 0.233 0.186 0.000 0.000 chr19 4002736 4044386
view PIBF1 172 57 64 37 0 0 0.667 0.221 0.248 0.143 0.000 0.000 chr13 72777133 73021461
view PICALM 178 64 60 27 0 0 0.690 0.248 0.233 0.105 0.000 0.000 chr11 85952175 86074084
view PICK1 213 72 39 29 0 0 0.826 0.279 0.151 0.112 0.000 0.000 chr22 38052404 38080701
view PID1 127 32 60 36 0 0 0.492 0.124 0.233 0.140 0.000 0.000 chr2 229018973 229276287
view PIDD1 203 63 51 39 1 0 0.787 0.244 0.198 0.151 0.004 0.000 chr11 794184 810231
view PIERCE1 210 67 46 36 0 0 0.814 0.260 0.178 0.140 0.000 0.000 chr9 135490181 135504869
view PIERCE2 207 74 51 31 0 0 0.802 0.287 0.198 0.120 0.000 0.000 chr15 55403495 55423798
view PIEZO1 140 26 77 44 0 0 0.543 0.101 0.298 0.171 0.000 0.000 chr16 88710338 88790220
view PIEZO2 79 12 76 44 0 0 0.306 0.047 0.295 0.171 0.000 0.000 chr18 10665247 11154569
view PIF1 173 41 72 54 0 0 0.671 0.159 0.279 0.209 0.000 0.000 chr15 64810632 64830647
view PIFO 219 83 36 19 2 2 0.849 0.322 0.140 0.074 0.008 0.008 chr1 111341622 111358013
view PIGA 89 25 156 72 0 0 0.345 0.097 0.605 0.279 0.000 0.000 chrX 15314456 15340523
view PIGBOS1 207 73 49 30 0 0 0.802 0.283 0.190 0.116 0.000 0.000 chr15 55312184 55324123
view PIGB 187 66 59 33 0 0 0.725 0.256 0.229 0.128 0.000 0.000 chr15 55314222 55360648
view PIGC 193 60 59 40 2 1 0.748 0.233 0.229 0.155 0.008 0.004 chr1 172436457 172449069
view PIGF 182 49 66 48 0 0 0.705 0.190 0.256 0.186 0.000 0.000 chr2 46575937 46622041
view PIGG 180 53 65 42 0 0 0.698 0.205 0.252 0.163 0.000 0.000 chr4 494210 545200
view PIGH 230 84 28 21 0 0 0.891 0.326 0.109 0.081 0.000 0.000 chr14 67584318 67605268
view PIGK 182 61 59 34 0 0 0.705 0.236 0.229 0.132 0.000 0.000 chr1 77083989 77224430
view PIGL 122 18 100 60 0 0 0.473 0.070 0.388 0.233 0.000 0.000 chr17 16212210 16331411
view PIGM 215 85 40 17 1 1 0.833 0.329 0.155 0.066 0.004 0.004 chr1 160019953 160036990