Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PCDHGB1 138 35 95 59 0 0 0.535 0.136 0.368 0.229 0.000 0.000 chr5 141345099 141517975
view PCDHGB2 143 36 94 59 0 0 0.554 0.140 0.364 0.229 0.000 0.000 chr5 141354994 141517975
view PCDHGB3 147 40 85 52 0 0 0.570 0.155 0.329 0.202 0.000 0.000 chr5 141365242 141517975
view PCDHGB4 146 41 92 51 0 0 0.566 0.159 0.357 0.198 0.000 0.000 chr5 141382698 141517975
view PCDHGB5 149 42 88 52 0 0 0.578 0.163 0.341 0.202 0.000 0.000 chr5 141392947 141517975
view PCDHGB6 150 42 91 55 0 0 0.581 0.163 0.353 0.213 0.000 0.000 chr5 141403021 141517975
view PCDHGB7 152 42 88 54 0 0 0.589 0.163 0.341 0.209 0.000 0.000 chr5 141412677 141517975
view PCDHGC3 174 49 76 51 0 0 0.674 0.190 0.295 0.198 0.000 0.000 chr5 141470966 141517975
view PCDHGC4 176 48 71 53 0 0 0.682 0.186 0.275 0.205 0.000 0.000 chr5 141480030 141517975
view PCDHGC5 181 53 66 46 0 0 0.702 0.205 0.256 0.178 0.000 0.000 chr5 141484081 141517975
view PCED1A 217 82 36 20 1 0 0.841 0.318 0.140 0.078 0.004 0.000 chr20 2830314 2845655
view PCED1B 160 52 52 28 0 0 0.620 0.202 0.202 0.109 0.000 0.000 chr12 47074621 47241660
view PCF11 197 69 54 34 0 0 0.764 0.267 0.209 0.132 0.000 0.000 chr11 83152131 83190794
view PCGF1 183 55 72 48 1 0 0.709 0.213 0.279 0.186 0.004 0.000 chr2 74500043 74512695
view PCGF2 200 65 53 35 0 0 0.775 0.252 0.205 0.136 0.000 0.000 chr17 38728898 38753336
view PCGF3 182 55 53 33 0 0 0.705 0.213 0.205 0.128 0.000 0.000 chr4 700832 775089
view PCGF5 158 46 83 49 0 0 0.612 0.178 0.322 0.190 0.000 0.000 chr10 91215663 91289337
view PCGF6 185 58 58 33 0 0 0.717 0.225 0.225 0.128 0.000 0.000 chr10 103297796 103356140
view PCID2 206 70 39 22 1 1 0.798 0.271 0.151 0.085 0.004 0.004 chr13 113172536 113213669
view PCIF1 210 73 44 28 0 0 0.814 0.283 0.171 0.109 0.000 0.000 chr20 45929683 45953020
view PCK1 233 91 22 12 1 1 0.903 0.353 0.085 0.047 0.004 0.004 chr20 57556110 57573121
view PCK2 201 72 52 29 0 0 0.779 0.279 0.202 0.112 0.000 0.000 chr14 24089311 24109125
view PCLAF 148 33 101 66 0 0 0.574 0.128 0.391 0.256 0.000 0.000 chr15 64359304 64386441
view PCLO 93 14 94 57 0 0 0.360 0.054 0.364 0.221 0.000 0.000 chr7 82749012 83167884
view PCM1 183 62 54 33 1 1 0.709 0.240 0.209 0.128 0.004 0.004 chr8 17917988 18034948
view PCMT1 166 51 72 39 0 0 0.643 0.198 0.279 0.151 0.000 0.000 chr6 149744741 149816419
view PCMTD1 167 60 83 44 0 0 0.647 0.233 0.322 0.171 0.000 0.000 chr8 51812583 51904036
view PCMTD2 165 38 79 55 0 0 0.640 0.147 0.306 0.213 0.000 0.000 chr20 64250748 64281226
view PCNA 194 66 61 38 0 0 0.752 0.256 0.236 0.147 0.000 0.000 chr20 5109953 5124958
view PCNP 211 79 40 19 0 0 0.818 0.306 0.155 0.074 0.000 0.000 chr3 101569180 101599465
view PCNT 165 44 67 41 0 0 0.640 0.171 0.260 0.159 0.000 0.000 chr21 46319156 46450769
view PCNX1 175 63 64 31 0 0 0.678 0.244 0.248 0.120 0.000 0.000 chr14 70902459 71120382
view PCNX2 72 14 85 51 0 0 0.279 0.054 0.329 0.198 0.000 0.000 chr1 232978435 233300725
view PCNX3 197 70 53 29 0 0 0.764 0.271 0.205 0.112 0.000 0.000 chr11 65610776 65642439
view PCNX4 153 61 94 39 1 1 0.593 0.236 0.364 0.151 0.004 0.004 chr14 60086923 60153221
view PCOLCE2 170 46 59 39 0 0 0.659 0.178 0.229 0.151 0.000 0.000 chr3 142812874 142894083
view PCOLCE 165 44 87 56 0 0 0.640 0.171 0.337 0.217 0.000 0.000 chr7 100597363 100613175
view PCP2 205 65 48 35 0 0 0.795 0.252 0.186 0.136 0.000 0.000 chr19 7626615 7638719
view PCP4L1 200 69 48 26 0 0 0.775 0.267 0.186 0.101 0.000 0.000 chr1 161253745 161290450
view PCP4 213 79 31 17 0 0 0.826 0.306 0.120 0.066 0.000 0.000 chr21 39862438 39934392
view PCSK1N 97 25 155 77 0 0 0.376 0.097 0.601 0.298 0.000 0.000 chrX 48826096 48840610
view PCSK1 195 69 49 29 0 0 0.756 0.267 0.190 0.112 0.000 0.000 chr5 96385333 96438248
view PCSK2 136 38 61 39 0 0 0.527 0.147 0.236 0.151 0.000 0.000 chr20 17222040 17489578
view PCSK4 199 62 50 34 0 0 0.771 0.240 0.194 0.132 0.000 0.000 chr19 1476428 1495350
view PCSK5 82 6 89 60 0 0 0.318 0.023 0.345 0.233 0.000 0.000 chr9 75885673 76367975
view PCSK6 167 40 55 40 0 0 0.647 0.155 0.213 0.155 0.000 0.000 chr15 101298933 101494707
view PCSK7 229 82 17 13 1 1 0.888 0.318 0.066 0.050 0.004 0.004 chr11 117199337 117237073
view PCSK9 203 66 45 31 0 0 0.787 0.256 0.174 0.120 0.000 0.000 chr1 55034548 55069852
view PCTP 144 43 104 56 0 0 0.558 0.167 0.403 0.217 0.000 0.000 chr17 55746051 55782374
view PCYOX1L 185 64 69 38 0 0 0.717 0.248 0.267 0.147 0.000 0.000 chr5 149353046 149374653