Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view OR51D1 222 79 34 25 1 0 0.860 0.306 0.132 0.097 0.004 0.000 chr11 4632477 4648060
view OR51E1 225 86 28 15 0 0 0.872 0.333 0.109 0.058 0.000 0.000 chr11 4638982 4660488
view OR51E2 230 85 24 17 0 0 0.891 0.329 0.093 0.066 0.000 0.000 chr11 4675171 4702853
view OR51F1 170 46 87 58 0 0 0.659 0.178 0.337 0.225 0.000 0.000 chr11 4763979 4774938
view OR51F2 202 67 55 37 0 0 0.783 0.260 0.213 0.143 0.000 0.000 chr11 4816321 4827456
view OR51G1 225 82 28 19 1 0 0.872 0.318 0.109 0.074 0.004 0.000 chr11 4918374 4929339
view OR51G2 228 82 27 21 1 0 0.884 0.318 0.105 0.081 0.004 0.000 chr11 4907588 4924350
view OR51I1 235 89 21 15 2 1 0.911 0.345 0.081 0.058 0.008 0.004 chr11 5435570 5446514
view OR51I2 240 92 18 13 0 0 0.930 0.357 0.070 0.050 0.000 0.000 chr11 5444323 5461518
view OR51L1 234 87 22 18 0 0 0.907 0.337 0.085 0.070 0.000 0.000 chr11 4989851 5010536
view OR51M1 224 81 30 21 0 0 0.868 0.314 0.116 0.081 0.000 0.000 chr11 5378812 5398263
view OR51Q1 226 81 30 23 0 0 0.876 0.314 0.116 0.089 0.000 0.000 chr11 5417111 5428206
view OR51S1 206 67 50 38 2 0 0.798 0.260 0.194 0.147 0.008 0.000 chr11 4843237 4854208
view OR51T1 212 71 44 32 0 0 0.822 0.275 0.171 0.124 0.000 0.000 chr11 4876900 4887883
view OR51V1 222 81 36 24 0 0 0.860 0.314 0.140 0.093 0.000 0.000 chr11 5194735 5205682
view OR52A1 218 74 38 29 0 0 0.845 0.287 0.147 0.112 0.000 0.000 chr11 5141824 5159757
view OR52A5 208 71 48 32 0 0 0.806 0.275 0.186 0.124 0.000 0.000 chr11 5123776 5143356
view OR52B2 206 70 48 32 1 0 0.798 0.271 0.186 0.124 0.004 0.000 chr11 6164355 6175326
view OR52B4 232 88 26 17 0 0 0.899 0.341 0.101 0.066 0.000 0.000 chr11 4362263 4373386
view OR52B6 226 79 28 23 0 0 0.876 0.306 0.109 0.089 0.000 0.000 chr11 5575877 5586884
view OR52D1 234 92 23 13 1 0 0.907 0.357 0.089 0.050 0.004 0.000 chr11 5483685 5494749
view OR52E2 224 83 32 20 1 1 0.868 0.322 0.124 0.078 0.004 0.004 chr11 5053650 5064627
view OR52E4 219 87 36 15 3 3 0.849 0.337 0.140 0.058 0.012 0.012 chr11 5875629 5892079
view OR52E5 231 89 25 14 2 2 0.895 0.345 0.097 0.054 0.008 0.008 chr11 5888208 5907730
view OR52E6 224 88 32 16 1 0 0.868 0.341 0.124 0.062 0.004 0.000 chr11 5835928 5846897
view OR52E8 217 84 39 19 0 0 0.841 0.326 0.151 0.074 0.000 0.000 chr11 5851749 5862690
view OR52H1 213 72 44 32 0 0 0.826 0.279 0.171 0.124 0.000 0.000 chr11 5539561 5553540
view OR52I1 198 64 58 39 0 0 0.767 0.248 0.225 0.151 0.000 0.000 chr11 4589039 4600013
view OR52I2 212 75 45 29 0 0 0.822 0.291 0.174 0.112 0.000 0.000 chr11 4576743 4598340
view OR52J3 223 85 34 19 0 0 0.864 0.329 0.132 0.074 0.000 0.000 chr11 5041526 5052461
view OR52K1 201 67 53 34 1 1 0.779 0.260 0.205 0.132 0.004 0.004 chr11 4477646 4498497
view OR52K2 238 90 18 14 0 0 0.922 0.349 0.070 0.054 0.000 0.000 chr11 4444295 4455361
view OR52L1 222 82 32 22 2 0 0.860 0.318 0.124 0.085 0.008 0.000 chr11 5980892 5991985
view OR52M1 214 74 42 30 1 1 0.829 0.287 0.163 0.116 0.004 0.004 chr11 4540191 4551144
view OR52N1 208 77 45 25 0 0 0.806 0.298 0.174 0.097 0.000 0.000 chr11 5781471 5796265
view OR52N2 200 70 50 29 0 0 0.775 0.271 0.194 0.112 0.000 0.000 chr11 5803924 5826483
view OR52N4 235 95 20 9 3 1 0.911 0.368 0.078 0.035 0.012 0.004 chr11 5749243 5760958
view OR52N5 168 52 85 51 0 0 0.651 0.202 0.329 0.198 0.000 0.000 chr11 5771165 5788355
view OR52R1 205 64 52 41 0 0 0.795 0.248 0.202 0.159 0.000 0.000 chr11 4798433 4809380
view OR52W1 219 82 37 21 1 1 0.849 0.318 0.143 0.081 0.004 0.004 chr11 6194224 6205186
view OR56A1 200 59 50 39 1 1 0.775 0.229 0.194 0.151 0.004 0.004 chr11 6014336 6035758
view OR56A3 234 93 24 12 0 0 0.907 0.360 0.093 0.047 0.000 0.000 chr11 5937251 5956347
view OR56A4 234 90 22 13 1 1 0.907 0.349 0.085 0.050 0.004 0.004 chr11 5994445 6011946
view OR56A5 217 83 40 22 1 0 0.841 0.322 0.155 0.085 0.004 0.000 chr11 5962553 5973494
view OR56B1 224 87 31 15 0 0 0.868 0.337 0.120 0.058 0.000 0.000 chr11 5731448 5743523
view OR56B2P 216 83 38 19 2 1 0.837 0.322 0.147 0.074 0.008 0.004 chr11 5756153 5774080
view OR56B4 191 65 65 38 0 0 0.740 0.252 0.252 0.147 0.000 0.000 chr11 6102684 6113835
view OR5A1 203 72 53 32 0 0 0.787 0.279 0.205 0.124 0.000 0.000 chr11 59431469 59456380
view OR5A2 209 74 46 28 1 1 0.810 0.287 0.178 0.109 0.004 0.004 chr11 59411969 59431413
view OR5AC2 230 87 26 16 0 0 0.891 0.337 0.101 0.062 0.000 0.000 chr3 98082173 98093102