Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view OR1F1 163 41 73 47 0 0 0.632 0.159 0.283 0.182 0.000 0.000 chr16 3183204 3211556
view OR1G1 208 73 49 31 0 0 0.806 0.283 0.190 0.120 0.000 0.000 chr17 3121610 3132551
view OR1I1 227 83 29 20 1 1 0.880 0.322 0.112 0.078 0.004 0.004 chr19 15077211 15097970
view OR1J1 235 88 21 15 1 1 0.911 0.341 0.081 0.058 0.004 0.004 chr9 122471958 122482926
view OR1J2 233 90 22 13 1 0 0.903 0.349 0.085 0.050 0.004 0.000 chr9 122505802 122516743
view OR1J4 219 81 37 23 1 0 0.849 0.314 0.143 0.089 0.004 0.000 chr9 122514141 122525082
view OR1K1 211 71 45 32 0 0 0.818 0.275 0.174 0.124 0.000 0.000 chr9 122795123 122806073
view OR1L1 226 81 31 23 0 0 0.876 0.314 0.120 0.089 0.000 0.000 chr9 122656716 122667648
view OR1L3 189 59 67 44 0 0 0.733 0.229 0.260 0.171 0.000 0.000 chr9 122670130 122681104
view OR1L4 181 63 76 42 1 0 0.702 0.244 0.295 0.163 0.004 0.000 chr9 122718990 122729925
view OR1L6 173 52 78 47 0 0 0.671 0.202 0.302 0.182 0.000 0.000 chr9 122737303 122755783
view OR1L8 217 81 35 19 0 0 0.841 0.314 0.136 0.074 0.000 0.000 chr9 122562117 122588384
view OR1M1 217 78 38 25 0 0 0.841 0.302 0.147 0.097 0.000 0.000 chr19 9082061 9100669
view OR1N1 225 87 32 17 0 0 0.872 0.337 0.124 0.066 0.000 0.000 chr9 122521358 122532293
view OR1N2 217 78 40 26 0 0 0.841 0.302 0.155 0.101 0.000 0.000 chr9 122548112 122559214
view OR1Q1 221 86 36 18 0 0 0.857 0.333 0.140 0.070 0.000 0.000 chr9 122609738 122620682
view OR1R1P 207 77 48 25 0 0 0.802 0.298 0.186 0.097 0.000 0.000 chr17 3380930 3391874
view OR1S1 229 86 27 17 1 1 0.888 0.333 0.105 0.066 0.004 0.004 chr11 58207720 58221084
view OR1S2 212 75 45 29 0 0 0.822 0.291 0.174 0.112 0.000 0.000 chr11 58198204 58209142
view OR2A12 194 70 57 31 0 0 0.752 0.271 0.221 0.120 0.000 0.000 chr7 144081278 144103953
view OR2A14 212 82 44 21 2 2 0.822 0.318 0.171 0.081 0.008 0.008 chr7 144118176 144136188
view OR2A1 58 18 88 44 60 4 0.225 0.070 0.341 0.171 0.233 0.016 chr7 144307419 144327737
view OR2A25 208 75 48 29 1 1 0.806 0.291 0.186 0.112 0.004 0.004 chr7 144064811 144080870
view OR2A2 203 75 55 30 0 0 0.787 0.291 0.213 0.116 0.000 0.000 chr7 144104583 144115539
view OR2A42 80 26 76 34 63 19 0.310 0.101 0.295 0.132 0.244 0.074 chr7 144223244 144244605
view OR2A4 189 67 65 35 0 0 0.733 0.260 0.252 0.136 0.000 0.000 chr6 131694644 131706401
view OR2A5 209 76 45 25 0 0 0.810 0.295 0.174 0.097 0.000 0.000 chr7 144043948 144063845
view OR2A7 91 40 19 14 145 48 0.353 0.155 0.074 0.054 0.562 0.186 chr7 144252663 144269792
view OR2AE1 193 65 65 40 0 0 0.748 0.252 0.252 0.155 0.000 0.000 chr7 99871062 99882033
view OR2AG1 233 90 22 12 1 1 0.903 0.349 0.085 0.047 0.004 0.004 chr11 6778020 6796558
view OR2AG2 232 93 25 11 0 0 0.899 0.360 0.097 0.043 0.000 0.000 chr11 6760626 6776976
view OR2AJ1 215 77 38 24 1 0 0.833 0.298 0.147 0.093 0.004 0.000 chr1 247919889 247940339
view OR2AK2 215 75 39 28 2 0 0.833 0.291 0.151 0.109 0.008 0.000 chr1 247960233 247971386
view OR2AP1 238 94 17 9 2 1 0.922 0.364 0.066 0.035 0.008 0.004 chr12 55567468 55580612
view OR2AT4 207 79 47 23 0 0 0.802 0.306 0.182 0.089 0.000 0.000 chr11 75076753 75101876
view OR2B11 238 88 19 16 0 0 0.922 0.341 0.074 0.062 0.000 0.000 chr1 247444182 247463104
view OR2B2 198 65 56 36 1 1 0.767 0.252 0.217 0.140 0.004 0.004 chr6 27906185 27917396
view OR2B3 204 71 51 33 2 0 0.791 0.275 0.198 0.128 0.008 0.000 chr6 29081208 29092313
view OR2B6 208 79 49 25 0 0 0.806 0.306 0.190 0.097 0.000 0.000 chr6 27952241 27963182
view OR2C1 215 74 42 30 0 0 0.833 0.287 0.163 0.116 0.000 0.000 chr16 3350889 3362306
view OR2C3 229 86 24 15 1 1 0.888 0.333 0.093 0.058 0.004 0.004 chr1 247519677 247541440
view OR2D2 240 97 17 7 0 0 0.930 0.376 0.066 0.027 0.000 0.000 chr11 6886574 6897500
view OR2D3 232 89 24 14 0 0 0.899 0.345 0.093 0.054 0.000 0.000 chr11 6916002 6926994
view OR2F1 200 77 53 27 1 0 0.775 0.298 0.205 0.105 0.004 0.000 chr7 143949844 143969360
view OR2F2 194 76 62 27 1 1 0.752 0.295 0.240 0.105 0.004 0.004 chr7 143930233 143941186
view OR2G2 229 87 22 13 3 2 0.888 0.337 0.085 0.050 0.012 0.008 chr1 247583360 247594313
view OR2G3 205 73 50 29 2 2 0.795 0.283 0.194 0.112 0.008 0.008 chr1 247600586 247611515
view OR2G6 0 0 1 0 0 0 0.000 0.000 0.004 0.000 0.000 0.000 chr1 248503073 248532337
view OR2H1 226 83 28 18 1 1 0.876 0.322 0.109 0.070 0.004 0.004 chr6 29452155 29469328
view OR2H2 230 86 25 18 2 1 0.891 0.333 0.097 0.070 0.008 0.004 chr6 29580121 29595500