Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view ONECUT2 199 72 41 25 0 0 0.771 0.279 0.159 0.097 0.000 0.000 chr18 57430374 57496298
view ONECUT3 184 48 54 39 0 0 0.713 0.186 0.209 0.151 0.000 0.000 chr19 1748506 1785988
view OOEP 213 75 44 30 1 0 0.826 0.291 0.171 0.116 0.004 0.000 chr6 73363555 73374897
view OOSP1 192 60 62 41 0 0 0.744 0.233 0.240 0.159 0.000 0.000 chr11 59933432 59962480
view OOSP2 98 26 127 61 0 0 0.380 0.101 0.492 0.236 0.000 0.000 chr11 60035409 60053044
view OOSP3 170 42 73 49 0 0 0.659 0.163 0.283 0.190 0.000 0.000 chr11 59873782 59901483
view OOSP4A 205 73 44 23 0 0 0.795 0.283 0.171 0.089 0.000 0.000 chr11 59959033 59975343
view OOSP4B 197 75 58 29 0 0 0.764 0.291 0.225 0.112 0.000 0.000 chr11 60012181 60036095
view OPA1 193 68 51 31 0 0 0.748 0.264 0.198 0.120 0.000 0.000 chr3 193588208 193702811
view OPA3 198 62 50 38 0 0 0.767 0.240 0.194 0.147 0.000 0.000 chr19 45541281 45589802
view OPALIN 200 66 55 36 0 0 0.775 0.256 0.213 0.140 0.000 0.000 chr10 96338221 96364002
view OPCML 34 0 96 50 0 0 0.132 0.000 0.372 0.194 0.000 0.000 chr11 132409981 133537501
view OPHN1 24 0 171 69 0 0 0.093 0.000 0.663 0.267 0.000 0.000 chrX 68037344 68438495
view OPLAH 158 37 94 65 0 0 0.612 0.143 0.364 0.252 0.000 0.000 chr8 144046266 144065692
view OPN1LW 73 20 164 69 0 0 0.283 0.078 0.636 0.267 0.000 0.000 chrX 154139243 154164032
view OPN1MW2 20 3 153 62 1 0 0.078 0.012 0.593 0.240 0.004 0.000 chrX 154214756 154238286
view OPN1MW3 0 0 16 3 0 0 0.000 0.000 0.062 0.012 0.000 0.000 chrX 154252582 154276090
view OPN1MW 6 3 118 55 0 0 0.023 0.012 0.457 0.213 0.000 0.000 chrX 154177596 154201861
view OPN1SW 193 59 61 42 0 0 0.748 0.229 0.236 0.163 0.000 0.000 chr7 128767485 128780794
view OPN3 204 69 40 26 0 0 0.791 0.267 0.155 0.101 0.000 0.000 chr1 241588124 241645369
view OPN4 224 82 30 19 0 0 0.868 0.318 0.116 0.074 0.000 0.000 chr10 86649547 86671460
view OPN5 160 36 68 44 0 0 0.620 0.140 0.264 0.171 0.000 0.000 chr6 47777032 47831381
view OPRD1 151 35 68 44 0 0 0.585 0.136 0.264 0.171 0.000 0.000 chr1 28807170 28876267
view OPRK1 185 56 66 44 0 0 0.717 0.217 0.256 0.171 0.000 0.000 chr8 53220724 53256637
view OPRL1 32 1 111 48 0 0 0.124 0.004 0.430 0.186 0.000 0.000 chr20 64075082 64105633
view OPRM1 133 30 92 60 0 0 0.516 0.116 0.357 0.233 0.000 0.000 chr6 154034240 154137356
view OPRPN 227 84 28 18 0 0 0.880 0.326 0.109 0.070 0.000 0.000 chr4 70392940 70415195
view OPTC 202 71 51 30 0 0 0.783 0.275 0.198 0.116 0.000 0.000 chr1 203489153 203513949
view OPTN 208 72 40 25 0 0 0.806 0.279 0.155 0.097 0.000 0.000 chr10 13095163 13143308
view OR10A2 233 89 24 15 0 0 0.903 0.345 0.093 0.058 0.000 0.000 chr11 6858057 6879717
view OR10A3 223 81 33 22 0 0 0.864 0.314 0.128 0.085 0.000 0.000 chr11 7932171 7946708
view OR10A4 222 84 34 19 0 0 0.860 0.326 0.132 0.074 0.000 0.000 chr11 6871625 6882619
view OR10A5 224 89 34 16 0 0 0.868 0.345 0.132 0.062 0.000 0.000 chr11 6840683 6851636
view OR10A6 220 78 31 22 3 1 0.853 0.302 0.120 0.085 0.012 0.004 chr11 7919592 7936268
view OR10A7 206 80 49 23 0 0 0.798 0.310 0.190 0.089 0.000 0.000 chr12 55216025 55226975
view OR10AD1 206 73 50 31 0 0 0.798 0.283 0.194 0.120 0.000 0.000 chr12 48197339 48208292
view OR10AG1 225 90 33 15 0 0 0.872 0.349 0.128 0.058 0.000 0.000 chr11 55960755 55974945
view OR10C1 225 87 32 18 1 0 0.872 0.337 0.124 0.070 0.004 0.000 chr6 29434306 29445977
view OR10D3 217 83 39 20 2 2 0.841 0.322 0.151 0.078 0.008 0.008 chr11 124178345 124193780
view OR10G2 236 91 22 14 0 0 0.915 0.353 0.085 0.054 0.000 0.000 chr14 21628836 21639940
view OR10G3 220 81 34 22 1 0 0.853 0.314 0.132 0.085 0.004 0.000 chr14 21563520 21585076
view OR10G4 218 80 37 23 1 0 0.845 0.310 0.143 0.089 0.004 0.000 chr11 124007997 124023732
view OR10G6 231 89 27 16 0 0 0.895 0.345 0.105 0.062 0.000 0.000 chr11 123989163 124000161
view OR10G7 240 91 15 11 2 2 0.930 0.353 0.058 0.043 0.008 0.008 chr11 124031013 124046325
view OR10G8 222 80 30 19 3 3 0.860 0.310 0.116 0.074 0.012 0.012 chr11 124021798 124035634
view OR10G9 220 82 35 21 1 0 0.853 0.318 0.136 0.081 0.004 0.000 chr11 124018013 124028948
view OR10H1 198 67 59 37 0 0 0.767 0.260 0.229 0.143 0.000 0.000 chr19 15799549 15820664
view OR10H2 206 72 49 30 0 0 0.798 0.279 0.190 0.116 0.000 0.000 chr19 15723024 15734052
view OR10H3 208 79 48 26 2 0 0.806 0.306 0.186 0.101 0.008 0.000 chr19 15732985 15747343
view OR10H4 201 69 52 34 1 0 0.779 0.267 0.202 0.132 0.004 0.000 chr19 15944008 15954958