Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view OR2I1P 234 87 21 15 0 0 0.907 0.337 0.081 0.058 0.000 0.000 chr6 29545407 29562773
view OR2J1 222 83 36 22 0 0 0.860 0.322 0.140 0.085 0.000 0.000 chr6 29094490 29107701
view OR2J2 221 85 33 19 2 0 0.857 0.329 0.128 0.074 0.008 0.000 chr6 29165907 29180811
view OR2J3 218 78 38 26 1 0 0.845 0.302 0.147 0.101 0.004 0.000 chr6 29103058 29119770
view OR2K2 213 81 45 24 0 0 0.826 0.314 0.174 0.093 0.000 0.000 chr9 111322229 111335224
view OR2L13 219 85 34 17 2 0 0.849 0.329 0.132 0.066 0.008 0.000 chr1 248090184 248106163
view OR2L2 198 74 53 29 2 0 0.767 0.287 0.205 0.112 0.008 0.000 chr1 248025070 248047305
view OR2L3 198 79 55 26 2 0 0.767 0.306 0.213 0.101 0.008 0.000 chr1 248041836 248068407
view OR2L5 205 79 49 24 2 0 0.795 0.306 0.190 0.093 0.008 0.000 chr1 248008660 248029276
view OR2L8 189 60 64 42 2 0 0.733 0.233 0.248 0.163 0.008 0.000 chr1 247943858 247954796
view OR2M2 228 84 27 19 1 0 0.884 0.326 0.105 0.074 0.004 0.000 chr1 248169821 248186067
view OR2M3 204 75 48 26 2 1 0.791 0.291 0.186 0.101 0.008 0.004 chr1 248192265 248217925
view OR2M4 199 71 55 33 2 0 0.771 0.275 0.213 0.128 0.008 0.000 chr1 248226417 248249679
view OR2M5 194 74 61 28 0 0 0.752 0.287 0.236 0.109 0.000 0.000 chr1 248140148 248151086
view OR2M7 199 75 56 29 2 1 0.771 0.291 0.217 0.112 0.008 0.004 chr1 248318630 248329568
view OR2S2 223 80 34 24 0 0 0.864 0.310 0.132 0.093 0.000 0.000 chr9 35952108 35963154
view OR2T10 157 71 92 31 1 0 0.609 0.275 0.357 0.120 0.004 0.000 chr1 248585487 248602700
view OR2T11 156 72 93 29 1 1 0.605 0.279 0.360 0.112 0.004 0.004 chr1 248618557 248640091
view OR2T12 202 75 49 25 0 0 0.783 0.291 0.190 0.097 0.000 0.000 chr1 248285139 248308424
view OR2T1 133 31 101 61 0 0 0.516 0.120 0.391 0.236 0.000 0.000 chr1 248398048 248413020
view OR2T27 191 64 60 37 3 0 0.740 0.248 0.233 0.143 0.012 0.000 chr1 248644838 248660528
view OR2T29 156 61 92 38 3 1 0.605 0.236 0.357 0.147 0.012 0.004 chr1 248551912 248567772
view OR2T2 164 65 38 26 55 13 0.636 0.252 0.147 0.101 0.213 0.050 chr1 248440637 248460725
view OR2T33 202 80 52 23 0 0 0.783 0.310 0.202 0.089 0.000 0.000 chr1 248264917 248282976
view OR2T34 156 73 94 28 2 1 0.605 0.283 0.364 0.109 0.008 0.004 chr1 248568801 248579757
view OR2T35 154 63 94 37 0 0 0.597 0.244 0.364 0.143 0.000 0.000 chr1 248631356 248650278
view OR2T3 168 72 27 16 63 17 0.651 0.279 0.105 0.062 0.244 0.066 chr1 248468351 248479307
view OR2T4 214 83 40 21 3 1 0.829 0.322 0.155 0.081 0.012 0.004 chr1 248356665 248367627
view OR2T5 144 65 32 19 79 19 0.558 0.252 0.124 0.074 0.306 0.074 chr1 248483589 248496113
view OR2T6 201 72 54 31 0 0 0.779 0.279 0.209 0.120 0.000 0.000 chr1 248370746 248396811
view OR2T8 214 79 41 26 2 0 0.829 0.306 0.159 0.101 0.008 0.000 chr1 247915252 247928152
view OR2V1 218 74 37 28 0 0 0.845 0.287 0.143 0.109 0.000 0.000 chr5 181118122 181136169
view OR2V2 211 68 42 33 0 0 0.818 0.264 0.163 0.128 0.000 0.000 chr5 181142586 181164285
view OR2W1 221 85 36 19 1 1 0.857 0.329 0.140 0.074 0.004 0.004 chr6 29039213 29050175
view OR2W3 193 64 54 33 2 0 0.748 0.248 0.209 0.128 0.008 0.000 chr1 247890587 247901531
view OR2Y1 235 94 22 11 1 0 0.911 0.364 0.085 0.043 0.004 0.000 chr5 180734123 180745058
view OR2Z1 218 77 38 27 0 0 0.845 0.298 0.147 0.105 0.000 0.000 chr19 8716634 8737160
view OR3A1 198 65 57 37 0 0 0.767 0.252 0.221 0.143 0.000 0.000 chr17 3286017 3303360
view OR3A2 158 42 77 47 0 0 0.612 0.163 0.298 0.182 0.000 0.000 chr17 3271177 3391308
view OR3A3 219 80 35 22 0 0 0.849 0.310 0.136 0.085 0.000 0.000 chr17 3406370 3429070
view OR4A15 229 86 27 18 1 0 0.888 0.333 0.105 0.070 0.004 0.000 chr11 55362974 55373918
view OR4A16 216 78 36 22 2 1 0.837 0.302 0.140 0.085 0.008 0.004 chr11 55338201 55349187
view OR4A47 207 77 48 26 1 1 0.802 0.298 0.186 0.101 0.004 0.004 chr11 48483793 48494722
view OR4A5 232 91 23 13 2 0 0.899 0.353 0.089 0.050 0.008 0.000 chr11 54701832 54712902
view OR4B1 217 77 39 26 0 0 0.841 0.298 0.151 0.101 0.000 0.000 chr11 48211810 48222739
view OR4C11 118 36 113 55 1 1 0.457 0.140 0.438 0.213 0.004 0.004 chr11 55597360 55612645
view OR4C12 210 76 43 26 2 0 0.814 0.295 0.167 0.101 0.008 0.000 chr11 49976473 49987535
view OR4C13 222 83 35 22 1 0 0.860 0.322 0.136 0.085 0.004 0.000 chr11 49947391 49958419
view OR4C15 227 88 26 14 3 2 0.880 0.341 0.101 0.054 0.012 0.008 chr11 55549469 55560419
view OR4C16 219 79 36 25 2 1 0.849 0.306 0.140 0.097 0.008 0.004 chr11 55567128 55578060