Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view REEP3 141 52 86 41 0 0 0.547 0.202 0.333 0.159 0.000 0.000 chr10 63516401 63630128
view REEP4 199 56 52 43 0 0 0.771 0.217 0.202 0.167 0.000 0.000 chr8 22133020 22146907
view REEP5 169 51 75 45 0 0 0.655 0.198 0.291 0.174 0.000 0.000 chr5 112871385 112927227
view REEP6 158 41 76 43 0 0 0.612 0.159 0.295 0.167 0.000 0.000 chr19 1486181 1502927
view REG1A 225 82 30 21 1 0 0.872 0.318 0.116 0.081 0.004 0.000 chr2 79115488 79128409
view REG1B 232 86 23 17 1 0 0.899 0.333 0.089 0.066 0.004 0.000 chr2 79080023 79092993
view REG3A 217 79 38 24 1 0 0.841 0.306 0.147 0.093 0.004 0.000 chr2 79152006 79164753
view REG3G 231 91 24 14 3 0 0.895 0.353 0.093 0.054 0.012 0.000 chr2 79020702 79033501
view REG4 230 82 24 20 0 0 0.891 0.318 0.093 0.078 0.000 0.000 chr1 119789017 119816460
view RELA 201 74 54 28 0 0 0.779 0.287 0.209 0.109 0.000 0.000 chr11 65648601 65667916
view RELB 190 55 48 35 0 0 0.736 0.213 0.186 0.136 0.000 0.000 chr19 44996464 45043192
view RELCH 169 52 78 49 0 0 0.655 0.202 0.302 0.190 0.000 0.000 chr18 62182255 62315249
view RELL1 161 41 71 47 0 0 0.624 0.159 0.275 0.182 0.000 0.000 chr4 37605634 37691376
view RELL2 208 68 45 33 0 0 0.806 0.264 0.174 0.128 0.000 0.000 chr5 141631997 141646064
view RELN 91 29 74 37 0 0 0.353 0.112 0.287 0.143 0.000 0.000 chr7 103466789 103994658
view RELT 169 49 80 49 0 0 0.655 0.190 0.310 0.190 0.000 0.000 chr11 73371399 73402474
view REL 137 34 104 61 0 0 0.531 0.132 0.403 0.236 0.000 0.000 chr2 60876574 60936612
view REM1 171 44 78 53 0 0 0.663 0.171 0.302 0.205 0.000 0.000 chr20 31470288 31489895
view REM2 195 56 58 45 2 1 0.756 0.217 0.225 0.174 0.008 0.004 chr14 22878222 22892678
view RENBP 88 26 157 67 0 0 0.341 0.101 0.609 0.260 0.000 0.000 chrX 153930269 153949643
view REN 215 76 40 26 0 0 0.833 0.295 0.155 0.101 0.000 0.000 chr1 204149819 204171337
view REP15 220 85 38 20 0 0 0.853 0.329 0.147 0.078 0.000 0.000 chr12 27691447 27702596
view REPIN1 199 63 56 40 1 0 0.771 0.244 0.217 0.155 0.004 0.000 chr7 150363822 150379039
view REPS1 194 77 56 24 0 0 0.752 0.298 0.217 0.093 0.000 0.000 chr6 138898493 138993253
view REPS2 24 3 181 71 0 0 0.093 0.012 0.702 0.275 0.000 0.000 chrX 16941658 17158272
view RER1 176 47 71 49 0 0 0.682 0.182 0.275 0.190 0.000 0.000 chr1 2386841 2410436
view RERE 101 18 119 68 0 0 0.391 0.070 0.461 0.264 0.000 0.000 chr1 8347404 8822640
view RERGL 200 65 54 37 0 0 0.775 0.252 0.209 0.143 0.000 0.000 chr12 18075869 18095193
view RERG 149 46 74 38 0 0 0.578 0.178 0.287 0.147 0.000 0.000 chr12 15102783 15226417
view RESF1 225 83 24 15 1 1 0.872 0.322 0.093 0.058 0.004 0.004 chr12 31954415 31998107
view RESP18 209 70 46 33 0 0 0.810 0.271 0.178 0.128 0.000 0.000 chr2 219322407 219338177
view REST 203 71 48 29 0 0 0.787 0.275 0.186 0.112 0.000 0.000 chr4 56902900 56940844
view RETNLB 225 84 28 17 2 1 0.872 0.326 0.109 0.066 0.008 0.004 chr3 108750638 108762410
view RETN 228 79 26 22 0 0 0.884 0.306 0.101 0.085 0.000 0.000 chr19 7664049 7675455
view RETREG1 146 36 75 47 0 0 0.566 0.140 0.291 0.182 0.000 0.000 chr5 16468053 16621997
view RETREG2 214 78 40 24 1 1 0.829 0.302 0.155 0.093 0.004 0.004 chr2 219173275 219190475
view RETREG3 179 50 63 40 0 0 0.694 0.194 0.244 0.155 0.000 0.000 chr17 42574515 42614374
view RETSAT 191 55 60 46 0 0 0.740 0.213 0.233 0.178 0.000 0.000 chr2 85336955 85359528
view RET 190 56 54 39 0 0 0.736 0.217 0.209 0.151 0.000 0.000 chr10 43072069 43135351
view REV1 161 45 77 48 0 0 0.624 0.174 0.298 0.186 0.000 0.000 chr2 99395477 99495017
view REV3L 143 34 96 63 0 0 0.554 0.132 0.372 0.244 0.000 0.000 chr6 111294033 111488218
view REX1BD 211 75 44 28 1 0 0.818 0.291 0.171 0.109 0.004 0.000 chr19 18583798 18597337
view REXO1 189 60 49 32 0 0 0.733 0.233 0.190 0.124 0.000 0.000 chr19 1810248 1853483
view REXO2 218 78 36 23 1 1 0.845 0.302 0.140 0.089 0.004 0.004 chr11 114434467 114455279
view REXO4 213 76 42 26 0 0 0.826 0.295 0.163 0.101 0.000 0.000 chr9 133401062 133423010
view REXO5 185 66 58 28 0 0 0.717 0.256 0.225 0.109 0.000 0.000 chr16 20801527 20854665
view RFC1 137 40 105 54 0 0 0.531 0.155 0.407 0.209 0.000 0.000 chr4 39282456 39371362
view RFC2 162 41 80 50 0 0 0.628 0.159 0.310 0.194 0.000 0.000 chr7 74226502 74259399
view RFC3 207 80 46 22 0 0 0.802 0.310 0.178 0.085 0.000 0.000 chr13 33813149 33842500
view RFC4 215 80 38 23 1 0 0.833 0.310 0.147 0.089 0.004 0.000 chr3 186784900 186811482