Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view RFC5 218 78 36 24 1 1 0.845 0.302 0.140 0.093 0.004 0.004 chr12 118011703 118037234
view RFESD 204 69 49 32 1 0 0.791 0.267 0.190 0.124 0.004 0.000 chr5 95641777 95663082
view RFFL 185 67 62 30 0 0 0.717 0.260 0.240 0.116 0.000 0.000 chr17 35000990 35068707
view RFK 203 69 54 36 0 0 0.787 0.267 0.209 0.140 0.000 0.000 chr9 76380526 76399426
view RFLNA 193 63 50 29 0 0 0.748 0.244 0.194 0.112 0.000 0.000 chr12 124290093 124321024
view RFNG 230 81 27 23 0 0 0.891 0.314 0.105 0.089 0.000 0.000 chr17 82042902 82056811
view RFPL1 221 80 36 24 0 0 0.857 0.310 0.140 0.093 0.000 0.000 chr22 29433583 29447455
view RFPL2 196 61 59 42 0 0 0.760 0.236 0.229 0.163 0.000 0.000 chr22 32185438 32210073
view RFPL3 211 72 46 32 0 0 0.818 0.279 0.178 0.124 0.000 0.000 chr22 32352867 32366161
view RFPL4AL1 238 95 18 9 2 1 0.922 0.368 0.070 0.035 0.008 0.004 chr19 55764118 55778420
view RFPL4A 230 87 23 15 1 1 0.891 0.337 0.089 0.058 0.004 0.004 chr19 55754097 55768421
view RFPL4B 228 81 29 24 1 0 0.884 0.314 0.112 0.093 0.004 0.000 chr6 112342330 112356294
view RFT1 161 37 80 55 0 0 0.624 0.143 0.310 0.213 0.000 0.000 chr3 53083483 53135435
view RFTN1 133 43 57 34 0 0 0.516 0.167 0.221 0.132 0.000 0.000 chr3 16310845 16518699
view RFTN2 155 56 84 37 0 0 0.601 0.217 0.326 0.143 0.000 0.000 chr2 197563224 197680587
view RFWD3 205 77 43 20 0 0 0.795 0.298 0.167 0.078 0.000 0.000 chr16 74616399 74671877
view RFX1 139 32 94 55 0 0 0.539 0.124 0.364 0.213 0.000 0.000 chr19 13956530 14011320
view RFX2 153 33 78 53 0 0 0.593 0.128 0.302 0.205 0.000 0.000 chr19 5988164 6115500
view RFX3 97 23 89 50 0 0 0.376 0.089 0.345 0.194 0.000 0.000 chr9 3213297 3531001
view RFX4 147 37 70 41 0 0 0.570 0.143 0.271 0.159 0.000 0.000 chr12 106578004 106767803
view RFX5 203 71 47 27 0 0 0.787 0.275 0.182 0.105 0.000 0.000 chr1 151335640 151352252
view RFX6 185 64 63 35 0 0 0.717 0.248 0.244 0.136 0.000 0.000 chr6 116872242 116937161
view RFX7 179 62 52 29 0 0 0.694 0.240 0.202 0.112 0.000 0.000 chr15 56082280 56248879
view RFX8 175 55 60 35 0 0 0.678 0.213 0.233 0.136 0.000 0.000 chr2 101392359 101480112
view RFXANK 215 75 40 27 0 0 0.833 0.291 0.155 0.105 0.000 0.000 chr19 19187258 19206866
view RFXAP 214 80 42 23 0 0 0.829 0.310 0.163 0.089 0.000 0.000 chr13 36814222 36834104
view RGCC 223 82 32 20 0 0 0.864 0.318 0.124 0.078 0.000 0.000 chr13 41452550 41475871
view RGL1 147 41 73 47 0 0 0.570 0.159 0.283 0.182 0.000 0.000 chr1 183800120 183933532
view RGL2 196 64 59 38 0 0 0.760 0.248 0.229 0.147 0.000 0.000 chr6 33286654 33303942
view RGL3 200 71 48 27 0 0 0.775 0.275 0.186 0.105 0.000 0.000 chr19 11389060 11424314
view RGL4 211 77 45 27 1 1 0.818 0.298 0.174 0.105 0.004 0.004 chr22 23686013 23704168
view RGMA 206 61 39 33 0 0 0.798 0.236 0.151 0.128 0.000 0.000 chr15 93030271 93094211
view RGMB 187 58 64 42 0 0 0.725 0.225 0.248 0.163 0.000 0.000 chr5 98768663 98801494
view RGN 92 29 154 68 0 0 0.357 0.112 0.597 0.264 0.000 0.000 chrX 47073443 47098313
view RGP1 218 86 38 18 0 0 0.845 0.333 0.147 0.070 0.000 0.000 chr9 35744287 35763585
view RGPD1 51 13 102 34 0 0 0.198 0.050 0.395 0.132 0.000 0.000 chr2 86937118 87018976
view RGPD2 88 11 132 71 0 0 0.341 0.043 0.512 0.275 0.000 0.000 chr2 87750960 87830796
view RGPD3 190 62 54 33 0 0 0.736 0.240 0.209 0.128 0.000 0.000 chr2 106398406 106473413
view RGPD4 186 61 56 33 1 1 0.721 0.236 0.217 0.128 0.004 0.004 chr2 107821892 107897544
view RGPD5 20 2 93 23 6 0 0.078 0.008 0.360 0.089 0.023 0.000 chr2 109789305 109862705
view RGPD6 1 0 47 1 0 0 0.004 0.000 0.182 0.004 0.000 0.000 chr2 110508802 110582222
view RGPD8 127 45 93 41 0 0 0.492 0.174 0.360 0.159 0.000 0.000 chr2 112363369 112438645
view RGR 212 72 43 30 0 0 0.822 0.279 0.167 0.116 0.000 0.000 chr10 84240053 84264960
view RGS10 196 64 45 29 0 0 0.760 0.248 0.174 0.112 0.000 0.000 chr10 119494817 119547719
view RGS11 227 82 28 21 0 0 0.880 0.318 0.109 0.081 0.000 0.000 chr16 263307 280944
view RGS12 155 37 70 48 0 0 0.601 0.143 0.271 0.186 0.000 0.000 chr4 3288021 3444913
view RGS13 209 76 41 22 0 0 0.810 0.295 0.159 0.085 0.000 0.000 chr1 192631147 192665311
view RGS14 208 68 45 33 0 0 0.806 0.264 0.174 0.128 0.000 0.000 chr5 177352924 177377596
view RGS16 220 81 36 22 0 0 0.853 0.314 0.140 0.085 0.000 0.000 chr1 182593623 182609389
view RGS17 168 50 54 30 0 0 0.651 0.194 0.209 0.116 0.000 0.000 chr6 152999459 153136282