Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PRAMEF25 78 34 95 45 59 11 0.302 0.132 0.368 0.174 0.229 0.043 chr1 13065774 13082884
view PRAMEF26 114 45 76 42 51 7 0.442 0.174 0.295 0.163 0.198 0.027 chr1 13143907 13161009
view PRAMEF27 59 22 125 60 4 4 0.229 0.085 0.484 0.233 0.016 0.016 chr1 13044476 13061575
view PRAMEF2 168 59 60 34 29 12 0.651 0.229 0.233 0.132 0.112 0.047 chr1 12852086 12866909
view PRAMEF33 208 84 44 20 3 0 0.806 0.326 0.171 0.078 0.012 0.000 chr1 13298539 13313907
view PRAMEF4 161 57 67 41 25 6 0.624 0.221 0.260 0.159 0.097 0.023 chr1 12874212 12891201
view PRAMEF5 71 30 45 35 127 29 0.275 0.116 0.174 0.136 0.492 0.112 chr1 13249198 13268435
view PRAMEF6 45 13 127 62 6 1 0.174 0.050 0.492 0.240 0.023 0.004 chr1 12933472 12952580
view PRAMEF7 127 34 97 55 12 2 0.492 0.132 0.376 0.213 0.047 0.008 chr1 12911610 12925751
view PRAMEF8 166 58 64 38 19 2 0.643 0.225 0.248 0.147 0.074 0.008 chr1 13276304 13290137
view PRAMEF9 101 40 78 45 65 11 0.391 0.155 0.302 0.174 0.252 0.043 chr1 13166848 13184459
view PRAME 199 68 51 30 0 0 0.771 0.264 0.198 0.116 0.000 0.000 chr22 22542701 22564265
view PRAP1 193 63 64 41 0 0 0.748 0.244 0.248 0.159 0.000 0.000 chr10 133342373 133357683
view PRB2 204 89 42 12 11 4 0.791 0.345 0.163 0.047 0.043 0.016 chr12 11386540 11400567
view PRB3 221 82 33 21 1 0 0.857 0.318 0.128 0.081 0.004 0.000 chr12 11260914 11274707
view PRB4 225 85 30 18 1 0 0.872 0.329 0.116 0.070 0.004 0.000 chr12 11302077 11315436
view PRC1 187 60 62 37 0 0 0.725 0.233 0.240 0.143 0.000 0.000 chr15 90961040 90999535
view PRCC 174 42 63 46 0 0 0.674 0.163 0.244 0.178 0.000 0.000 chr1 156762535 156805815
view PRCD 220 79 36 24 0 0 0.853 0.306 0.140 0.093 0.000 0.000 chr17 76535044 76550376
view PRCP 159 49 84 49 0 0 0.616 0.190 0.326 0.190 0.000 0.000 chr11 82817936 82905430
view PRDM10 162 59 69 31 0 0 0.628 0.229 0.267 0.120 0.000 0.000 chr11 129894711 130007835
view PRDM11 153 50 83 46 0 0 0.593 0.194 0.322 0.178 0.000 0.000 chr11 45141639 45240109
view PRDM12 195 57 48 34 0 0 0.756 0.221 0.186 0.132 0.000 0.000 chr9 130659594 130687983
view PRDM13 220 82 37 22 0 0 0.853 0.318 0.143 0.085 0.000 0.000 chr6 99601833 99620562
view PRDM14 210 76 40 23 1 1 0.814 0.295 0.155 0.089 0.004 0.004 chr8 70046651 70076252
view PRDM15 202 62 34 24 0 0 0.783 0.240 0.132 0.093 0.000 0.000 chr21 41793225 41884344
view PRDM16 104 16 50 32 0 0 0.403 0.062 0.194 0.124 0.000 0.000 chr1 3064203 3443621
view PRDM1 204 72 49 28 0 0 0.791 0.279 0.190 0.109 0.000 0.000 chr6 106081336 106114938
view PRDM2 161 49 65 41 0 0 0.624 0.190 0.252 0.159 0.000 0.000 chr1 13695188 13830079
view PRDM4 194 70 56 30 0 0 0.752 0.271 0.217 0.116 0.000 0.000 chr12 107727871 107766137
view PRDM5 148 49 71 37 0 0 0.574 0.190 0.275 0.143 0.000 0.000 chr4 120686915 120927726
view PRDM6 155 44 74 40 0 0 0.601 0.171 0.287 0.155 0.000 0.000 chr5 123084241 123199266
view PRDM7 195 58 52 36 1 1 0.756 0.225 0.202 0.140 0.004 0.004 chr16 90051566 90082331
view PRDM8 209 76 46 27 1 0 0.810 0.295 0.178 0.105 0.004 0.000 chr4 80192503 80209329
view PRDM9 211 79 42 22 0 0 0.818 0.306 0.163 0.085 0.000 0.000 chr5 23502609 23533093
view PRDX1 181 49 71 53 0 0 0.702 0.190 0.275 0.205 0.000 0.000 chr1 45506051 45526884
view PRDX2 205 70 49 32 0 0 0.795 0.271 0.190 0.124 0.000 0.000 chr19 12791823 12806800
view PRDX3 212 74 44 30 0 0 0.822 0.287 0.171 0.116 0.000 0.000 chr10 119162720 119183812
view PRDX4 111 41 143 61 0 0 0.430 0.159 0.554 0.236 0.000 0.000 chrX 23662493 23691397
view PRDX5 192 61 62 40 0 0 0.744 0.236 0.240 0.155 0.000 0.000 chr11 64313121 64326811
view PRDX6 200 70 53 31 0 0 0.775 0.271 0.205 0.120 0.000 0.000 chr1 173472335 173493815
view PREB 195 68 60 34 0 0 0.756 0.264 0.233 0.132 0.000 0.000 chr2 27125756 27139636
view PRELID1 204 70 53 34 0 0 0.791 0.271 0.205 0.132 0.000 0.000 chr5 177298799 177311949
view PRELID2 128 35 90 44 0 0 0.496 0.136 0.349 0.171 0.000 0.000 chr5 145751344 145840342
view PRELID3A 196 57 49 38 0 0 0.760 0.221 0.190 0.147 0.000 0.000 chr18 12402929 12437234
view PRELID3B 205 64 50 39 1 0 0.795 0.248 0.194 0.151 0.004 0.000 chr20 59028145 59047786
view PRELP 214 78 40 23 0 0 0.829 0.302 0.155 0.089 0.000 0.000 chr1 203470806 203496352
view PREPL 190 66 58 32 0 0 0.736 0.256 0.225 0.124 0.000 0.000 chr2 44312607 44366494
view PREP 105 21 104 59 0 0 0.407 0.081 0.403 0.229 0.000 0.000 chr6 105268218 105408082
view PREX1 133 36 76 45 0 0 0.516 0.140 0.295 0.174 0.000 0.000 chr20 48619252 48832999