Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PRPH2 195 63 53 36 0 0 0.756 0.244 0.205 0.140 0.000 0.000 chr6 42691598 42727597
view PRPH 190 55 67 49 0 0 0.736 0.213 0.260 0.190 0.000 0.000 chr12 49290147 49303686
view PRPS1L1 230 87 28 18 0 0 0.891 0.337 0.109 0.070 0.000 0.000 chr7 18021770 18032846
view PRPS1 58 7 188 88 0 0 0.225 0.027 0.729 0.341 0.000 0.000 chrX 107623510 107656026
view PRPS2 104 32 146 67 0 0 0.403 0.124 0.566 0.260 0.000 0.000 chrX 12786412 12829222
view PRPSAP1 182 54 57 38 0 0 0.705 0.209 0.221 0.147 0.000 0.000 chr17 76304478 76358916
view PRPSAP2 195 65 53 32 0 0 0.756 0.252 0.205 0.124 0.000 0.000 chr17 18853131 18936287
view PRR11 144 39 83 48 0 0 0.558 0.151 0.322 0.186 0.000 0.000 chr17 59150746 59211709
view PRR12 160 37 76 49 0 0 0.620 0.143 0.295 0.190 0.000 0.000 chr19 49586182 49631439
view PRR13 193 60 63 44 1 0 0.748 0.233 0.244 0.171 0.004 0.000 chr12 53436734 53451638
view PRR14L 157 45 72 45 0 0 0.609 0.174 0.279 0.174 0.000 0.000 chr22 31676347 31755132
view PRR14 147 33 103 64 1 1 0.570 0.128 0.399 0.248 0.004 0.004 chr16 30645960 30661413
view PRR15L 198 62 56 40 0 0 0.767 0.240 0.217 0.155 0.000 0.000 chr17 47946967 47962883
view PRR15 226 90 31 15 1 0 0.876 0.349 0.120 0.058 0.004 0.000 chr7 29558835 29572293
view PRR16 85 7 110 69 0 0 0.329 0.027 0.426 0.267 0.000 0.000 chr5 120459300 120692314
view PRR18 210 69 45 34 0 0 0.814 0.267 0.174 0.132 0.000 0.000 chr6 166300300 166313392
view PRR19 138 28 113 71 1 0 0.535 0.109 0.438 0.275 0.004 0.000 chr19 42297132 42315814
view PRR20A 165 46 70 38 1 0 0.640 0.178 0.271 0.147 0.004 0.000 chr13 57135918 57148939
view PRR20B 84 22 67 35 60 6 0.326 0.085 0.260 0.136 0.233 0.023 chr13 57142488 57155509
view PRR20C 69 19 72 37 58 3 0.267 0.074 0.279 0.143 0.225 0.012 chr13 57149061 57162082
view PRR20D 73 21 73 42 68 7 0.283 0.081 0.283 0.163 0.264 0.027 chr13 57155632 57168653
view PRR20E 129 33 89 44 1 0 0.500 0.128 0.345 0.171 0.004 0.000 chr13 57162197 57175218
view PRR20G 215 75 39 28 1 0 0.833 0.291 0.151 0.109 0.004 0.000 chr3 127278783 127293046
view PRR22 190 55 57 42 0 0 0.736 0.213 0.221 0.163 0.000 0.000 chr19 5777960 5789746
view PRR23A 191 67 64 36 1 0 0.740 0.260 0.248 0.140 0.004 0.000 chr3 138998962 139011268
view PRR23B 205 77 49 25 0 0 0.795 0.298 0.190 0.097 0.000 0.000 chr3 139014031 139025926
view PRR23C 212 83 45 22 1 0 0.822 0.322 0.174 0.085 0.004 0.000 chr3 139037102 139049892
view PRR23D1 83 36 76 32 76 27 0.322 0.140 0.295 0.124 0.295 0.105 chr8 7534627 7547450
view PRR23D2 61 13 94 45 46 6 0.236 0.050 0.364 0.174 0.178 0.023 chr8 7773591 7786413
view PRR23E 227 83 30 21 0 0 0.880 0.322 0.116 0.081 0.000 0.000 chr3 127188131 127203185
view PRR27 221 83 32 18 1 0 0.857 0.322 0.124 0.070 0.004 0.000 chr4 70149237 70171609
view PRR29 202 65 50 35 0 0 0.783 0.252 0.194 0.136 0.000 0.000 chr17 63993351 64009305
view PRR30 192 65 63 38 0 0 0.744 0.252 0.244 0.147 0.000 0.000 chr2 27131848 27144410
view PRR32 102 30 153 73 2 1 0.395 0.116 0.593 0.283 0.008 0.004 chrX 126814729 126826786
view PRR33 153 37 81 50 0 0 0.593 0.143 0.314 0.194 0.000 0.000 chr11 1883078 1896895
view PRR35 211 69 37 27 1 1 0.818 0.267 0.143 0.105 0.004 0.004 chr16 555394 570529
view PRR36 192 48 54 46 0 0 0.744 0.186 0.209 0.178 0.000 0.000 chr19 7863719 7879390
view PRR3 215 79 40 23 0 0 0.833 0.306 0.155 0.089 0.000 0.000 chr6 30552295 30568723
view PRR4 170 44 86 59 0 0 0.659 0.171 0.333 0.229 0.000 0.000 chr12 10840849 10854475
view PRR5L 135 37 61 38 0 0 0.523 0.143 0.236 0.147 0.000 0.000 chr11 36291288 36470204
view PRR5 220 78 21 17 0 0 0.853 0.302 0.081 0.066 0.000 0.000 chr22 44697204 44742681
view PRR7 165 32 82 63 0 0 0.640 0.124 0.318 0.244 0.000 0.000 chr5 177441814 177461286
view PRR9 216 78 35 20 1 1 0.837 0.302 0.136 0.078 0.004 0.004 chr1 153212584 153224310
view PRRC1 169 53 77 45 0 0 0.655 0.205 0.298 0.174 0.000 0.000 chr5 127512640 127560085
view PRRC2A 213 71 40 29 0 0 0.826 0.275 0.155 0.112 0.000 0.000 chr6 31615715 31642771
view PRRC2B 107 20 118 64 0 0 0.415 0.078 0.457 0.248 0.000 0.000 chr9 131389086 131505193
view PRRC2C 167 45 75 51 0 0 0.647 0.174 0.291 0.198 0.000 0.000 chr1 171480530 171598511
view PRRG1 43 5 208 97 0 0 0.167 0.019 0.806 0.376 0.000 0.000 chrX 37344364 37462291
view PRRG2 172 43 73 54 0 0 0.667 0.167 0.283 0.209 0.000 0.000 chr19 49576316 49596004
view PRRG3 105 31 146 69 3 1 0.407 0.120 0.566 0.267 0.012 0.004 chrX 151690458 151710924