Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PSD 193 67 59 32 0 0 0.748 0.260 0.229 0.124 0.000 0.000 chr10 102397619 102423785
view PSEN1 188 62 61 35 0 0 0.729 0.240 0.236 0.136 0.000 0.000 chr14 73131507 73228691
view PSEN2 207 77 42 22 0 0 0.802 0.298 0.163 0.085 0.000 0.000 chr1 226865616 226901098
view PSENEN 205 70 51 34 0 0 0.795 0.271 0.198 0.132 0.000 0.000 chr19 35740651 35752519
view PSG11 199 66 51 33 0 0 0.771 0.256 0.198 0.128 0.000 0.000 chr19 43002656 43031469
view PSG1 203 70 54 34 0 0 0.787 0.271 0.209 0.132 0.000 0.000 chr19 42861464 42884713
view PSG2 211 77 40 25 4 1 0.818 0.298 0.155 0.097 0.016 0.004 chr19 43059209 43087701
view PSG3 183 44 62 48 0 0 0.709 0.171 0.240 0.186 0.000 0.000 chr19 42716642 42745481
view PSG4 149 33 92 60 1 0 0.578 0.128 0.357 0.233 0.004 0.000 chr19 43187702 43210638
view PSG5 214 80 35 19 2 0 0.829 0.310 0.136 0.074 0.008 0.000 chr19 43162743 43191536
view PSG6 206 73 43 25 3 1 0.798 0.283 0.167 0.097 0.012 0.004 chr19 42897086 42922894
view PSG7 207 75 47 28 2 0 0.802 0.291 0.182 0.109 0.008 0.000 chr19 42919132 42942207
view PSG8 218 78 39 26 0 0 0.845 0.302 0.151 0.101 0.000 0.000 chr19 42749233 42770678
view PSG9 105 19 120 60 0 0 0.407 0.074 0.465 0.233 0.000 0.000 chr19 43248282 43274530
view PSIP1 149 39 87 53 0 0 0.578 0.151 0.337 0.205 0.000 0.000 chr9 15459066 15515970
view PSKH1 114 18 118 68 0 0 0.442 0.070 0.457 0.264 0.000 0.000 chr16 67888254 67934676
view PSKH2 209 70 46 33 0 0 0.810 0.271 0.178 0.128 0.000 0.000 chr8 86042109 86074668
view PSMA1 205 72 52 32 0 0 0.795 0.279 0.202 0.124 0.000 0.000 chr11 14499876 14525386
view PSMA2 167 49 82 49 0 0 0.647 0.190 0.318 0.190 0.000 0.000 chr7 42911861 42937174
view PSMA3 165 53 78 42 0 0 0.640 0.205 0.302 0.163 0.000 0.000 chr14 58239843 58277004
view PSMA4 214 80 41 22 0 0 0.829 0.310 0.159 0.085 0.000 0.000 chr15 78535444 78557417
view PSMA5 158 40 87 55 0 0 0.612 0.155 0.337 0.213 0.000 0.000 chr1 109394042 109431448
view PSMA6 189 57 59 39 0 0 0.733 0.221 0.229 0.151 0.000 0.000 chr14 35287382 35322493
view PSMA7 180 49 71 51 0 0 0.698 0.190 0.275 0.198 0.000 0.000 chr20 62131733 62148394
view PSMA8 133 42 103 53 0 0 0.516 0.163 0.399 0.205 0.000 0.000 chr18 26128869 26198355
view PSMB10 151 40 101 60 0 0 0.585 0.155 0.391 0.233 0.000 0.000 chr16 67929506 67941850
view PSMB11 222 74 31 27 2 1 0.860 0.287 0.120 0.105 0.008 0.004 chr14 23037212 23049060
view PSMB1 181 54 65 43 2 1 0.702 0.209 0.252 0.167 0.008 0.004 chr6 170530120 170558307
view PSMB2 149 48 93 50 0 0 0.578 0.186 0.360 0.194 0.000 0.000 chr1 35594541 35646526
view PSMB3 215 76 40 26 0 0 0.833 0.295 0.155 0.101 0.000 0.000 chr17 38747741 38769225
view PSMB4 198 69 59 35 0 0 0.767 0.267 0.229 0.136 0.000 0.000 chr1 151394573 151406937
view PSMB5 201 61 51 39 1 1 0.779 0.236 0.198 0.151 0.004 0.004 chr14 23020856 23039900
view PSMB6 226 88 31 16 1 1 0.876 0.341 0.120 0.062 0.004 0.004 chr17 4791164 4803495
view PSMB7 203 77 46 22 0 0 0.787 0.298 0.178 0.085 0.000 0.000 chr9 124348465 124420442
view PSMB8 234 88 22 15 1 1 0.907 0.341 0.085 0.058 0.004 0.004 chr6 32835717 32849047
view PSMB9 227 85 29 18 1 1 0.880 0.329 0.112 0.070 0.004 0.004 chr6 32849192 32864851
view PSMC1 194 66 55 31 0 0 0.752 0.256 0.213 0.120 0.000 0.000 chr14 90251553 90280429
view PSMC2 190 63 61 35 0 0 0.736 0.244 0.236 0.136 0.000 0.000 chr7 103342643 103374395
view PSMC3IP 193 60 65 45 0 0 0.748 0.233 0.252 0.174 0.000 0.000 chr17 42567310 42582729
view PSMC3 189 60 66 42 0 0 0.733 0.233 0.256 0.163 0.000 0.000 chr11 47413775 47431439
view PSMC4 178 54 77 49 0 0 0.690 0.209 0.298 0.190 0.000 0.000 chr19 39966165 39986764
view PSMC5 178 59 78 45 0 0 0.690 0.229 0.302 0.174 0.000 0.000 chr17 63822431 63837019
view PSMC6 198 75 52 26 0 0 0.767 0.291 0.202 0.101 0.000 0.000 chr14 52702200 52733590
view PSMD10 87 22 170 82 0 0 0.337 0.085 0.659 0.318 0.000 0.000 chrX 108079207 108096542
view PSMD11 144 33 104 66 0 0 0.558 0.128 0.403 0.256 0.000 0.000 chr17 32439510 32488319
view PSMD12 198 65 48 31 0 0 0.767 0.252 0.186 0.120 0.000 0.000 chr17 67332916 67371577
view PSMD13 224 78 27 20 1 1 0.868 0.302 0.105 0.078 0.004 0.004 chr11 231976 257984
view PSMD14 133 43 103 55 0 0 0.516 0.167 0.399 0.213 0.000 0.000 chr2 161303425 161416717
view PSMD1 181 73 66 29 0 0 0.702 0.283 0.256 0.112 0.000 0.000 chr2 231051867 231177827
view PSMD2 206 69 50 34 0 0 0.798 0.267 0.194 0.132 0.000 0.000 chr3 184294241 184314050