Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view QTRT1 201 73 49 26 0 0 0.779 0.283 0.190 0.101 0.000 0.000 chr19 10696439 10718365
view QTRT2 214 73 37 27 0 0 0.829 0.283 0.143 0.105 0.000 0.000 chr3 114051737 114093422
view R3HCC1L 193 66 49 31 0 0 0.748 0.256 0.190 0.120 0.000 0.000 chr10 98129657 98249897
view R3HCC1 235 87 22 17 0 0 0.911 0.337 0.085 0.066 0.000 0.000 chr8 23283108 23301279
view R3HDM1 115 36 106 53 0 0 0.446 0.140 0.411 0.205 0.000 0.000 chr2 135526484 135730269
view R3HDM2 167 55 71 35 0 0 0.647 0.213 0.275 0.136 0.000 0.000 chr12 57248764 57436043
view R3HDM4 215 66 39 36 1 1 0.833 0.256 0.151 0.140 0.004 0.004 chr19 891503 918219
view R3HDML 216 82 41 22 1 1 0.837 0.318 0.159 0.085 0.004 0.004 chr20 44332043 44356238
view RAB10 105 22 130 75 0 0 0.407 0.085 0.504 0.291 0.000 0.000 chr2 26029084 26142454
view RAB11A 176 60 76 41 0 0 0.682 0.233 0.295 0.159 0.000 0.000 chr15 65864491 65896989
view RAB11B 213 71 42 31 0 0 0.826 0.275 0.163 0.120 0.000 0.000 chr19 8385360 8409434
view RAB11FIP1 131 26 101 67 0 0 0.508 0.101 0.391 0.260 0.000 0.000 chr8 37853618 37904497
view RAB11FIP2 199 77 51 24 0 0 0.771 0.298 0.198 0.093 0.000 0.000 chr10 117999916 118051941
view RAB11FIP3 147 44 72 44 0 0 0.570 0.171 0.279 0.171 0.000 0.000 chr16 420649 528011
view RAB11FIP4 154 37 57 40 0 0 0.597 0.143 0.221 0.155 0.000 0.000 chr17 31386675 31543211
view RAB11FIP5 188 60 57 38 1 1 0.729 0.233 0.221 0.147 0.004 0.004 chr2 73068382 73117948
view RAB12 201 72 50 28 0 0 0.779 0.279 0.194 0.109 0.000 0.000 chr18 8604437 8644383
view RAB13 203 73 54 32 0 0 0.787 0.283 0.209 0.124 0.000 0.000 chr1 153976650 153991339
view RAB14 191 65 60 35 0 0 0.740 0.252 0.233 0.136 0.000 0.000 chr9 121173133 121206869
view RAB15 190 65 56 32 0 0 0.736 0.252 0.217 0.124 0.000 0.000 chr14 64940816 64977336
view RAB17 211 75 37 23 0 0 0.818 0.291 0.143 0.089 0.000 0.000 chr2 237569326 237595734
view RAB18 204 66 45 34 0 0 0.791 0.256 0.174 0.132 0.000 0.000 chr10 27499304 27547239
view RAB19 220 77 34 24 0 0 0.853 0.298 0.132 0.093 0.000 0.000 chr7 140399058 140432974
view RAB1A 169 55 72 37 0 0 0.655 0.213 0.279 0.143 0.000 0.000 chr2 65081854 65135106
view RAB1B 212 78 39 20 0 0 0.822 0.302 0.151 0.078 0.000 0.000 chr11 66263639 66282492
view RAB20 212 72 36 28 0 0 0.822 0.279 0.140 0.109 0.000 0.000 chr13 110518066 110566722
view RAB21 189 64 60 34 0 0 0.733 0.248 0.233 0.132 0.000 0.000 chr12 71749863 71805286
view RAB22A 196 66 50 33 0 0 0.760 0.256 0.194 0.128 0.000 0.000 chr20 58304715 58372507
view RAB23 122 28 108 60 0 0 0.473 0.109 0.419 0.233 0.000 0.000 chr6 57181992 57227307
view RAB24 201 67 56 37 0 0 0.779 0.260 0.217 0.143 0.000 0.000 chr5 177296198 177308719
view RAB25 174 49 79 52 0 0 0.674 0.190 0.306 0.202 0.000 0.000 chr1 156056160 156075504
view RAB26 191 57 58 40 0 0 0.740 0.221 0.225 0.155 0.000 0.000 chr16 2143625 2159165
view RAB27A 159 40 72 50 0 0 0.616 0.155 0.279 0.194 0.000 0.000 chr15 55197966 55294813
view RAB27B 166 51 70 41 0 0 0.643 0.198 0.271 0.159 0.000 0.000 chr18 54823477 54900516
view RAB28 97 23 109 60 0 0 0.376 0.089 0.422 0.233 0.000 0.000 chr4 13362724 13489340
view RAB29 206 67 51 37 0 0 0.798 0.260 0.198 0.143 0.000 0.000 chr1 205762986 205780482
view RAB2A 178 63 65 33 0 0 0.690 0.244 0.252 0.128 0.000 0.000 chr8 60511987 60628644
view RAB2B 205 71 51 33 0 0 0.795 0.275 0.198 0.128 0.000 0.000 chr14 21454020 21481959
view RAB30 163 51 79 44 0 0 0.632 0.198 0.306 0.171 0.000 0.000 chr11 82968133 83076897
view RAB31 160 38 41 29 0 0 0.620 0.147 0.159 0.112 0.000 0.000 chr18 9703301 9867551
view RAB32 206 77 48 26 0 0 0.798 0.298 0.186 0.101 0.000 0.000 chr6 146538833 146559953
view RAB33A 95 30 158 71 0 0 0.368 0.116 0.612 0.275 0.000 0.000 chrX 130166962 130189870
view RAB33B 200 74 54 27 0 0 0.775 0.287 0.209 0.105 0.000 0.000 chr4 139449121 139481609
view RAB34 172 49 81 53 1 0 0.667 0.190 0.314 0.205 0.004 0.000 chr17 28709284 28722868
view RAB35 206 67 46 33 0 0 0.798 0.260 0.178 0.128 0.000 0.000 chr12 120090099 120121753
view RAB36 198 61 57 41 0 0 0.767 0.236 0.221 0.159 0.000 0.000 chr22 23140477 23170663
view RAB37 215 75 38 25 0 0 0.833 0.291 0.147 0.097 0.000 0.000 chr17 74732256 74752335
view RAB38 209 71 42 30 0 0 0.810 0.275 0.163 0.116 0.000 0.000 chr11 88108251 88180443
view RAB39A 202 71 42 21 0 0 0.783 0.275 0.163 0.081 0.000 0.000 chr11 107923448 107968482
view RAB39B 81 22 176 82 0 0 0.314 0.085 0.682 0.318 0.000 0.000 chrX 155253235 155269491