Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view RTF1 112 28 109 59 0 0 0.434 0.109 0.422 0.229 0.000 0.000 chr15 41412095 41488563
view RTF2 193 67 57 33 0 0 0.748 0.260 0.221 0.128 0.000 0.000 chr20 56463627 56524449
view RTKN2 130 30 107 64 0 0 0.504 0.116 0.415 0.248 0.000 0.000 chr10 62188086 62273844
view RTKN 190 68 59 29 1 1 0.736 0.264 0.229 0.112 0.004 0.004 chr2 74420835 74446937
view RTL10 208 75 49 29 0 0 0.806 0.291 0.190 0.112 0.000 0.000 chr22 19841146 19859874
view RTL1 214 65 36 32 0 0 0.829 0.252 0.140 0.124 0.000 0.000 chr14 100874753 100908722
view RTL3 94 30 164 75 0 0 0.364 0.116 0.636 0.291 0.000 0.000 chrX 78651068 78664328
view RTL4 13 0 184 75 0 0 0.050 0.000 0.713 0.291 0.000 0.000 chrX 112078016 112462514
view RTL5 90 33 165 69 0 0 0.349 0.128 0.640 0.267 0.000 0.000 chrX 72122110 72136915
view RTL6 200 68 53 32 0 0 0.775 0.264 0.205 0.124 0.000 0.000 chr22 44487583 44503233
view RTL8A 97 30 157 71 0 0 0.376 0.116 0.609 0.275 0.000 0.000 chrX 135045932 135057135
view RTL8B 81 23 174 79 0 0 0.314 0.089 0.674 0.306 0.000 0.000 chrX 135015513 135027542
view RTL8C 84 29 168 72 2 0 0.326 0.112 0.651 0.279 0.008 0.000 chrX 135027355 135038546
view RTL9 17 0 225 99 0 0 0.066 0.000 0.872 0.384 0.000 0.000 chrX 110353848 110461334
view RTN1 85 23 101 54 0 0 0.329 0.089 0.391 0.209 0.000 0.000 chr14 59590983 59875776
view RTN2 215 73 42 32 0 0 0.833 0.283 0.163 0.124 0.000 0.000 chr19 45480294 45502047
view RTN3 84 4 140 79 0 0 0.326 0.016 0.543 0.306 0.000 0.000 chr11 63676500 63764882
view RTN4IP1 197 71 56 30 0 0 0.764 0.275 0.217 0.116 0.000 0.000 chr6 106565771 106634498
view RTN4RL1 191 54 45 36 0 0 0.740 0.209 0.174 0.140 0.000 0.000 chr17 1929677 2030334
view RTN4RL2 173 46 75 51 0 0 0.671 0.178 0.291 0.198 0.000 0.000 chr11 57455528 57482534
view RTN4R 195 58 55 43 0 0 0.756 0.225 0.213 0.167 0.000 0.000 chr22 20236415 20273318
view RTN4 174 58 69 40 0 0 0.674 0.225 0.267 0.155 0.000 0.000 chr2 54967189 55055451
view RTP1 222 80 33 22 0 0 0.860 0.310 0.128 0.085 0.000 0.000 chr3 187192486 187206462
view RTP2 210 72 47 32 0 0 0.814 0.279 0.182 0.124 0.000 0.000 chr3 187693259 187707557
view RTP3 212 76 45 28 0 0 0.822 0.295 0.174 0.109 0.000 0.000 chr3 46492976 46505950
view RTP4 227 86 31 19 0 0 0.880 0.333 0.120 0.074 0.000 0.000 chr3 187363385 187377076
view RTP5 182 55 62 37 0 0 0.705 0.213 0.240 0.143 0.000 0.000 chr2 241864729 241878823
view RTRAF 217 76 33 22 0 0 0.841 0.295 0.128 0.085 0.000 0.000 chr14 51984546 52015694
view RTTN 77 2 127 79 0 0 0.298 0.008 0.492 0.306 0.000 0.000 chr18 69998031 70210687
view RUBCNL 177 64 70 36 0 0 0.686 0.248 0.271 0.140 0.000 0.000 chr13 46329681 46392252
view RUBCN 92 11 139 79 0 0 0.357 0.043 0.539 0.306 0.000 0.000 chr3 197663867 197741904
view RUFY1 187 55 57 39 0 0 0.725 0.213 0.221 0.151 0.000 0.000 chr5 179545554 179615012
view RUFY2 137 36 93 54 0 0 0.531 0.140 0.360 0.209 0.000 0.000 chr10 68338408 68412277
view RUFY3 126 37 103 52 0 0 0.488 0.143 0.399 0.202 0.000 0.000 chr4 70716964 70813619
view RUFY4 196 61 52 37 0 0 0.760 0.236 0.202 0.143 0.000 0.000 chr2 218064253 218095584
view RUNDC1 165 40 80 57 0 0 0.640 0.155 0.310 0.221 0.000 0.000 chr17 42975565 43000142
view RUNDC3A 205 71 51 32 0 0 0.795 0.275 0.198 0.124 0.000 0.000 chr17 44303601 44323670
view RUNDC3B 100 25 113 60 0 0 0.388 0.097 0.438 0.233 0.000 0.000 chr7 87623398 87837296
view RUNX1T1 65 1 161 89 0 0 0.252 0.004 0.624 0.345 0.000 0.000 chr8 91949972 92108385
view RUNX1 84 6 92 59 0 0 0.326 0.023 0.357 0.229 0.000 0.000 chr21 34782801 35054302
view RUNX2 88 14 103 59 0 0 0.341 0.054 0.399 0.229 0.000 0.000 chr6 45323330 45556082
view RUNX3 192 59 52 33 0 0 0.744 0.229 0.202 0.128 0.000 0.000 chr1 24894511 24935276
view RUSC1 158 37 93 62 0 0 0.612 0.143 0.360 0.240 0.000 0.000 chr1 155315894 155336114
view RUSC2 160 52 72 40 0 0 0.620 0.202 0.279 0.155 0.000 0.000 chr9 35485111 35566895
view RUSF1 188 67 66 35 0 0 0.729 0.260 0.256 0.136 0.000 0.000 chr16 31484475 31513391
view RUVBL1 179 68 70 30 0 0 0.694 0.264 0.271 0.116 0.000 0.000 chr3 128075810 128128812
view RUVBL2 205 67 43 30 0 0 0.795 0.260 0.167 0.116 0.000 0.000 chr19 48988887 49020970
view RWDD1 188 68 62 32 0 0 0.729 0.264 0.240 0.124 0.000 0.000 chr6 116566504 116602675
view RWDD2A 215 75 40 27 0 0 0.833 0.291 0.155 0.105 0.000 0.000 chr6 83188357 83203935
view RWDD2B 218 74 38 30 0 0 0.845 0.287 0.147 0.116 0.000 0.000 chr21 28999384 29024349