Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SAGE1 60 15 192 84 0 0 0.233 0.058 0.744 0.326 0.000 0.000 chrX 135888716 135918062
view SAGSIN1 209 69 45 32 0 0 0.810 0.267 0.174 0.124 0.000 0.000 chr7 6324411 6353967
view SAG 183 64 63 34 0 0 0.709 0.248 0.244 0.132 0.000 0.000 chr2 233302816 233352055
view SALL1 186 63 66 40 0 0 0.721 0.244 0.256 0.155 0.000 0.000 chr16 51130982 51156270
view SALL2 235 90 21 14 0 0 0.911 0.349 0.081 0.054 0.000 0.000 chr14 21516080 21531346
view SALL3 157 39 80 49 0 0 0.609 0.151 0.310 0.190 0.000 0.000 chr18 78974818 79003969
view SALL4 191 59 61 42 0 0 0.740 0.229 0.236 0.163 0.000 0.000 chr20 51777331 51807521
view SAMD10 170 38 77 56 0 0 0.659 0.147 0.298 0.217 0.000 0.000 chr20 63969116 63984642
view SAMD11 216 72 33 25 0 0 0.837 0.279 0.128 0.097 0.000 0.000 chr1 918923 949574
view SAMD12 93 20 97 47 0 0 0.360 0.078 0.376 0.182 0.000 0.000 chr8 118372984 118626963
view SAMD13 157 49 89 49 0 0 0.609 0.190 0.345 0.190 0.000 0.000 chr1 84296708 84355798
view SAMD14 198 64 58 39 0 0 0.767 0.248 0.225 0.151 0.000 0.000 chr17 50105040 50135160
view SAMD15 156 35 94 62 0 0 0.605 0.136 0.364 0.240 0.000 0.000 chr14 77372379 77397163
view SAMD3 168 53 61 37 0 0 0.651 0.205 0.236 0.143 0.000 0.000 chr6 130139315 130227951
view SAMD4A 130 33 75 38 0 0 0.504 0.128 0.291 0.147 0.000 0.000 chr14 54562128 54798312
view SAMD4B 115 31 126 71 0 0 0.446 0.120 0.488 0.275 0.000 0.000 chr19 39337421 39390700
view SAMD5 181 52 52 36 0 0 0.702 0.202 0.202 0.140 0.000 0.000 chr6 147503690 147575021
view SAMD7 207 73 46 28 0 0 0.802 0.283 0.178 0.109 0.000 0.000 chr3 169906572 169944175
view SAMD8 161 51 83 44 0 0 0.624 0.198 0.322 0.171 0.000 0.000 chr10 75106656 75187123
view SAMD9L 200 75 52 26 1 1 0.775 0.291 0.202 0.101 0.004 0.004 chr7 93125056 93153385
view SAMD9 195 77 59 26 0 0 0.756 0.298 0.229 0.101 0.000 0.000 chr7 93094518 93122979
view SAMHD1 169 54 67 40 1 1 0.655 0.209 0.260 0.155 0.004 0.004 chr20 36885229 36956708
view SAMM50 188 58 61 40 0 0 0.729 0.225 0.236 0.155 0.000 0.000 chr22 43950442 44001529
view SAMSN1 203 73 40 21 0 0 0.787 0.283 0.155 0.081 0.000 0.000 chr21 14480228 14551315
view SANBR 172 50 65 41 0 0 0.667 0.194 0.252 0.159 0.000 0.000 chr2 61060871 61129280
view SAP130 174 58 71 39 0 0 0.674 0.225 0.275 0.151 0.000 0.000 chr2 127936222 128033059
view SAP18 212 74 39 25 0 0 0.822 0.287 0.151 0.097 0.000 0.000 chr13 21135119 21154097
view SAP25 192 58 61 42 0 0 0.744 0.225 0.236 0.163 0.000 0.000 chr7 100567228 100578900
view SAP30BP 184 63 59 34 0 0 0.713 0.244 0.229 0.132 0.000 0.000 chr17 75662338 75713059
view SAP30L 229 84 27 19 0 0 0.888 0.326 0.105 0.074 0.000 0.000 chr5 154440997 154466053
view SAP30 180 63 73 40 0 0 0.698 0.244 0.283 0.155 0.000 0.000 chr4 173365954 173382532
view SAPCD1 208 69 49 35 0 0 0.806 0.267 0.190 0.136 0.000 0.000 chr6 31757656 31769850
view SAPCD2 206 65 49 38 0 0 0.798 0.252 0.190 0.147 0.000 0.000 chr9 137057127 137075557
view SAR1A 209 72 43 27 0 0 0.810 0.279 0.167 0.105 0.000 0.000 chr10 70142289 70175514
view SAR1B 160 51 81 40 0 0 0.620 0.198 0.314 0.155 0.000 0.000 chr5 134596149 134637828
view SARAF 179 60 72 41 0 0 0.694 0.233 0.279 0.159 0.000 0.000 chr8 30058003 30088064
view SARDH 130 26 84 42 0 0 0.504 0.101 0.326 0.163 0.000 0.000 chr9 133658560 133743352
view SARM1 167 46 74 46 0 0 0.647 0.178 0.287 0.178 0.000 0.000 chr17 28366694 28409049
view SARNP 137 33 99 59 0 0 0.531 0.128 0.384 0.229 0.000 0.000 chr12 55752270 55822724
view SARS1 200 65 53 37 0 0 0.775 0.252 0.205 0.143 0.000 0.000 chr1 109208918 109243182
view SARS2 209 69 41 31 0 0 0.810 0.267 0.159 0.120 0.000 0.000 chr19 38910266 38935763
view SART1 191 59 55 35 0 0 0.740 0.229 0.213 0.136 0.000 0.000 chr11 65956734 65985137
view SART3 196 76 57 26 0 0 0.760 0.295 0.221 0.101 0.000 0.000 chr12 108517214 108566173
view SASH1 160 38 50 35 0 0 0.620 0.147 0.194 0.136 0.000 0.000 chr6 148337838 148557044
view SASH3 92 29 158 69 0 0 0.357 0.112 0.612 0.267 0.000 0.000 chrX 129774949 129800201
view SASS6 151 42 96 54 0 0 0.585 0.163 0.372 0.209 0.000 0.000 chr1 100078570 100137930
view SAT1 103 32 149 67 0 0 0.399 0.124 0.578 0.260 0.000 0.000 chrX 23778173 23791210
view SAT2 215 76 36 22 1 1 0.833 0.295 0.140 0.085 0.004 0.004 chr17 7621234 7632821
view SATB1 175 55 65 41 0 0 0.678 0.213 0.252 0.159 0.000 0.000 chr3 18340377 18430339
view SATB2 126 30 94 58 0 0 0.488 0.116 0.364 0.225 0.000 0.000 chr2 199264505 199462939