Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SCGB1D2 217 78 40 26 0 0 0.841 0.302 0.155 0.101 0.000 0.000 chr11 62237239 62249812
view SCGB1D4 214 76 41 27 1 1 0.829 0.295 0.159 0.105 0.004 0.004 chr11 62291281 62304075
view SCGB2A1 220 77 35 26 1 0 0.853 0.298 0.136 0.101 0.004 0.000 chr11 62203673 62218943
view SCGB2A2 194 62 60 40 0 0 0.752 0.240 0.233 0.155 0.000 0.000 chr11 62265158 62278160
view SCGB2B2 184 68 53 26 0 0 0.713 0.264 0.205 0.101 0.000 0.000 chr19 34585644 34682159
view SCGB3A1 234 89 20 15 2 0 0.907 0.345 0.078 0.058 0.008 0.000 chr5 180585105 180596499
view SCGB3A2 211 76 42 27 3 1 0.818 0.295 0.163 0.105 0.012 0.004 chr5 147873711 147887191
view SCGN 183 58 53 32 0 0 0.709 0.225 0.205 0.124 0.000 0.000 chr6 25647215 25706783
view SCHIP1 50 2 116 62 0 0 0.194 0.008 0.450 0.240 0.000 0.000 chr3 159268244 159902359
view SCIMP 192 64 52 30 1 1 0.744 0.248 0.202 0.116 0.004 0.004 chr17 5203920 5239860
view SCIN 185 56 46 31 0 0 0.717 0.217 0.178 0.120 0.000 0.000 chr7 12565720 12665182
view SCLT1 143 54 85 39 0 0 0.554 0.209 0.329 0.151 0.000 0.000 chr4 128878993 129098539
view SCLY 195 71 53 28 0 0 0.756 0.275 0.205 0.109 0.000 0.000 chr2 238056001 238104413
view SCMH1 151 60 81 37 0 0 0.585 0.233 0.314 0.143 0.000 0.000 chr1 41022202 41247306
view SCML1 76 21 176 78 0 0 0.295 0.081 0.682 0.302 0.000 0.000 chrX 17732493 17759985
view SCML2 61 17 169 73 0 0 0.236 0.066 0.655 0.283 0.000 0.000 chrX 18234313 18359688
view SCML4 124 30 87 53 0 0 0.481 0.116 0.337 0.205 0.000 0.000 chr6 107697154 107829313
view SCN10A 185 60 49 30 0 0 0.717 0.233 0.190 0.116 0.000 0.000 chr3 38691807 38821217
view SCN11A 156 50 72 40 0 0 0.605 0.194 0.279 0.155 0.000 0.000 chr3 38840764 39056944
view SCN1A 177 61 59 31 0 0 0.686 0.236 0.229 0.120 0.000 0.000 chr2 165980813 166133020
view SCN1B 201 64 50 36 0 0 0.779 0.248 0.194 0.140 0.000 0.000 chr19 35025470 35045449
view SCN2A 178 58 51 33 0 0 0.690 0.225 0.198 0.128 0.000 0.000 chr2 165234414 165397304
view SCN2B 224 80 30 23 0 0 0.868 0.310 0.116 0.089 0.000 0.000 chr11 118157806 118181639
view SCN3A 156 49 81 48 0 0 0.605 0.190 0.314 0.186 0.000 0.000 chr2 165082526 165209050
view SCN3B 224 77 28 23 0 0 0.868 0.298 0.109 0.089 0.000 0.000 chr11 123624188 123659624
view SCN4A 177 56 68 40 0 0 0.686 0.217 0.264 0.155 0.000 0.000 chr17 63933554 63977918
view SCN4B 222 80 28 19 1 0 0.860 0.310 0.109 0.074 0.004 0.000 chr11 118128377 118157823
view SCN5A 169 59 55 28 0 0 0.655 0.229 0.213 0.109 0.000 0.000 chr3 38543062 38654687
view SCN7A 196 66 48 30 0 0 0.760 0.256 0.186 0.116 0.000 0.000 chr2 166398573 166499249
view SCN8A 100 17 112 67 0 0 0.388 0.066 0.434 0.260 0.000 0.000 chr12 51586233 51817864
view SCN9A 147 45 69 43 0 0 0.570 0.174 0.267 0.167 0.000 0.000 chr2 166190185 166380944
view SCNM1 188 54 69 50 0 0 0.729 0.209 0.267 0.194 0.000 0.000 chr1 151161144 151175296
view SCNN1A 226 79 26 21 0 0 0.876 0.306 0.101 0.081 0.000 0.000 chr12 6341847 6380563
view SCNN1B 152 41 72 43 0 0 0.589 0.159 0.279 0.167 0.000 0.000 chr16 23297302 23386294
view SCNN1D 144 37 85 42 1 0 0.558 0.143 0.329 0.163 0.004 0.000 chr1 1275436 1297025
view SCNN1G 159 32 78 55 1 1 0.616 0.124 0.302 0.213 0.004 0.004 chr16 23177745 23221883
view SCO1 207 72 45 28 0 0 0.802 0.279 0.174 0.109 0.000 0.000 chr17 10667474 10702533
view SCO2 204 65 48 36 3 1 0.791 0.252 0.186 0.140 0.012 0.004 chr22 50518568 50530598
view SCOC 208 70 47 33 0 0 0.806 0.271 0.182 0.128 0.000 0.000 chr4 140368646 140390728
view SCP2D1 226 79 29 24 2 1 0.876 0.306 0.112 0.093 0.008 0.004 chr20 18808783 18819378
view SCP2 139 47 78 39 0 0 0.539 0.182 0.302 0.151 0.000 0.000 chr1 52922276 53056698
view SCPEP1 189 61 58 35 0 0 0.733 0.236 0.225 0.136 0.000 0.000 chr17 56973131 57011768
view SCRG1 189 62 60 36 0 0 0.733 0.240 0.233 0.140 0.000 0.000 chr4 173379701 173404116
view SCRIB 193 59 59 41 0 0 0.748 0.229 0.229 0.159 0.000 0.000 chr8 143785925 143820773
view SCRN1 136 41 83 39 0 0 0.527 0.159 0.322 0.151 0.000 0.000 chr7 29915109 29994801
view SCRN2 198 58 58 45 0 0 0.767 0.225 0.225 0.174 0.000 0.000 chr17 47832692 47846273
view SCRN3 181 53 68 45 0 0 0.702 0.205 0.264 0.174 0.000 0.000 chr2 174390730 174434575
view SCRT1 198 62 53 36 0 0 0.767 0.240 0.205 0.140 0.000 0.000 chr8 144325565 144341482
view SCRT2 228 82 23 18 0 0 0.884 0.318 0.089 0.070 0.000 0.000 chr20 656596 680802
view SCTR 144 28 68 46 0 0 0.558 0.109 0.264 0.178 0.000 0.000 chr2 119434843 119529483