Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SEMA3A 137 46 63 35 0 0 0.531 0.178 0.244 0.136 0.000 0.000 chr7 83950777 84199789
view SEMA3B 194 66 61 37 1 0 0.752 0.256 0.236 0.143 0.004 0.000 chr3 50264147 50282546
view SEMA3C 121 40 73 35 0 0 0.469 0.155 0.283 0.136 0.000 0.000 chr7 80737538 80924051
view SEMA3D 132 35 87 46 0 0 0.512 0.136 0.337 0.178 0.000 0.000 chr7 84990553 85192056
view SEMA3E 112 21 88 60 0 0 0.434 0.081 0.341 0.233 0.000 0.000 chr7 83358238 83654139
view SEMA3F 171 57 75 41 0 0 0.663 0.221 0.291 0.159 0.000 0.000 chr3 50150324 50194075
view SEMA3G 154 33 98 68 0 0 0.597 0.128 0.380 0.264 0.000 0.000 chr3 52428035 52450103
view SEMA4A 186 57 56 36 1 0 0.721 0.221 0.217 0.140 0.004 0.000 chr1 156148585 156182744
view SEMA4B 209 73 42 26 1 1 0.810 0.283 0.163 0.101 0.004 0.004 chr15 90196330 90234660
view SEMA4C 174 52 75 46 0 0 0.674 0.202 0.291 0.178 0.000 0.000 chr2 96854718 96875080
view SEMA4D 184 53 45 33 0 0 0.713 0.205 0.174 0.128 0.000 0.000 chr9 89372235 89503113
view SEMA4F 147 47 87 40 0 0 0.570 0.182 0.337 0.155 0.000 0.000 chr2 74649247 74688841
view SEMA4G 185 58 67 42 0 0 0.717 0.225 0.260 0.163 0.000 0.000 chr10 100964504 100990616
view SEMA5A 66 10 93 53 0 0 0.256 0.039 0.360 0.205 0.000 0.000 chr5 9030033 9551075
view SEMA5B 144 29 73 52 0 0 0.558 0.112 0.283 0.202 0.000 0.000 chr3 122904082 123032763
view SEMA6A 151 35 54 36 0 0 0.585 0.136 0.209 0.140 0.000 0.000 chr5 116438555 116579823
view SEMA6B 219 70 30 26 0 0 0.849 0.271 0.116 0.101 0.000 0.000 chr19 4537593 4564684
view SEMA6C 168 44 81 54 0 0 0.651 0.171 0.314 0.209 0.000 0.000 chr1 151126707 151151631
view SEMA6D 193 62 48 30 0 0 0.748 0.240 0.186 0.116 0.000 0.000 chr15 47712505 47779228
view SEMA7A 201 67 49 33 0 0 0.779 0.260 0.190 0.128 0.000 0.000 chr15 74404289 74438958
view SEMG1 203 71 54 34 1 0 0.787 0.275 0.209 0.132 0.004 0.000 chr20 45202033 45214768
view SEMG2 180 53 75 50 0 0 0.698 0.205 0.291 0.194 0.000 0.000 chr20 45216373 45229458
view SENP1 196 66 54 35 0 0 0.760 0.256 0.209 0.136 0.000 0.000 chr12 48037897 48111079
view SENP2 179 53 71 45 0 0 0.694 0.205 0.275 0.174 0.000 0.000 chr3 185581295 185638551
view SENP3 222 81 34 23 1 0 0.860 0.314 0.132 0.089 0.004 0.000 chr17 7556919 7576969
view SENP5 152 40 84 49 0 0 0.589 0.155 0.326 0.190 0.000 0.000 chr3 196862920 196939714
view SENP6 180 68 71 33 0 0 0.698 0.264 0.275 0.128 0.000 0.000 chr6 75596880 75723281
view SENP7 184 67 56 28 0 0 0.713 0.260 0.217 0.109 0.000 0.000 chr3 101319205 101518212
view SENP8 199 68 53 34 0 0 0.771 0.264 0.205 0.132 0.000 0.000 chr15 72113403 72148692
view SEPHS1 188 57 52 34 0 0 0.729 0.221 0.202 0.132 0.000 0.000 chr10 13312428 13353293
view SEPHS2 170 48 87 56 1 1 0.659 0.186 0.337 0.217 0.004 0.004 chr16 30438631 30450874
view SEPSECS 227 84 28 18 0 0 0.880 0.326 0.109 0.070 0.000 0.000 chr4 25115014 25165449
view SEPTIN10 201 65 45 32 0 0 0.779 0.252 0.174 0.124 0.000 0.000 chr2 109537799 109618966
view SEPTIN11 184 66 61 34 0 0 0.713 0.256 0.236 0.132 0.000 0.000 chr4 76944752 77043615
view SEPTIN12 210 68 44 33 0 0 0.814 0.264 0.171 0.128 0.000 0.000 chr16 4772606 4793345
view SEPTIN14 194 63 52 33 0 0 0.752 0.244 0.202 0.128 0.000 0.000 chr7 55788540 55867752
view SEPTIN1 154 39 98 61 0 0 0.597 0.151 0.380 0.236 0.000 0.000 chr16 30373135 30387561
view SEPTIN2 203 73 49 30 0 0 0.787 0.283 0.190 0.116 0.000 0.000 chr2 241310925 241359027
view SEPTIN3 179 51 60 40 0 0 0.694 0.198 0.233 0.155 0.000 0.000 chr22 41964443 42003221
view SEPTIN4 179 54 73 46 0 0 0.694 0.209 0.283 0.178 0.000 0.000 chr17 58515256 58549328
view SEPTIN5 191 59 54 34 0 0 0.740 0.229 0.209 0.132 0.000 0.000 chr22 19709503 19728319
view SEPTIN6 62 9 165 76 0 0 0.240 0.035 0.640 0.295 0.000 0.000 chrX 119611945 119698168
view SEPTIN7 172 59 66 33 0 0 0.667 0.229 0.256 0.128 0.000 0.000 chr7 35796057 35912110
view SEPTIN8 162 56 75 35 0 0 0.628 0.217 0.291 0.136 0.000 0.000 chr5 132745819 132782239
view SEPTIN9 74 5 82 40 0 0 0.287 0.019 0.318 0.155 0.000 0.000 chr17 77276499 77505593
view SEPTIN9 78 6 88 43 0 0 0.302 0.023 0.341 0.167 0.000 0.000 chr17 77314518 77505593
view SERAC1 182 60 67 41 0 0 0.705 0.233 0.260 0.159 0.000 0.000 chr6 158104519 158173262
view SERBP1 183 57 65 40 0 0 0.709 0.221 0.252 0.155 0.000 0.000 chr1 67402810 67435402
view SERF1A 2 1 61 31 0 0 0.008 0.004 0.236 0.120 0.000 0.000 chr5 70895669 70913115
view SERF1B 109 44 69 42 71 12 0.422 0.171 0.267 0.163 0.275 0.047 chr5 70020251 70048113