Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SFTPB 212 73 41 28 0 0 0.822 0.283 0.159 0.109 0.000 0.000 chr2 85652314 85673199
view SFTPC 232 85 26 20 0 0 0.899 0.329 0.101 0.078 0.000 0.000 chr8 22156798 22169479
view SFTPD 211 78 45 25 0 0 0.818 0.302 0.174 0.097 0.000 0.000 chr10 79932740 79954105
view SFXN1 185 56 49 32 0 0 0.717 0.217 0.190 0.124 0.000 0.000 chr5 175473560 175534742
view SFXN2 201 73 49 27 0 0 0.779 0.283 0.190 0.105 0.000 0.000 chr10 102709636 102748492
view SFXN3 221 77 34 25 0 0 0.857 0.298 0.132 0.097 0.000 0.000 chr10 101026234 101046241
view SFXN4 215 74 35 24 0 0 0.833 0.287 0.136 0.093 0.000 0.000 chr10 119135767 119170714
view SFXN5 124 27 80 47 0 0 0.481 0.105 0.310 0.182 0.000 0.000 chr2 72937036 73076712
view SGCA 207 61 47 40 0 0 0.802 0.236 0.182 0.155 0.000 0.000 chr17 50161005 50180928
view SGCB 184 63 63 33 0 0 0.713 0.244 0.244 0.128 0.000 0.000 chr4 52015706 52043299
view SGCD 74 14 111 61 0 0 0.287 0.054 0.430 0.236 0.000 0.000 chr5 156322164 156772788
view SGCE 194 81 54 21 0 0 0.752 0.314 0.209 0.081 0.000 0.000 chr7 94579980 94661133
view SGCG 176 54 50 33 0 0 0.682 0.209 0.194 0.128 0.000 0.000 chr13 23175979 23330162
view SGCZ 51 4 92 54 0 0 0.198 0.016 0.357 0.209 0.000 0.000 chr8 14079845 15243431
view SGF29 172 51 68 43 0 0 0.667 0.198 0.264 0.167 0.000 0.000 chr16 28548920 28596790
view SGIP1 150 39 75 50 0 0 0.581 0.151 0.291 0.194 0.000 0.000 chr1 66529153 66756139
view SGK1 124 26 77 44 0 0 0.481 0.101 0.298 0.171 0.000 0.000 chr6 134164256 134323112
view SGK2 207 79 40 18 1 1 0.802 0.306 0.155 0.070 0.004 0.004 chr20 43554027 43590627
view SGK3 70 11 145 71 0 0 0.271 0.043 0.562 0.275 0.000 0.000 chr8 66707781 66867022
view SGMS1 155 47 60 35 0 0 0.601 0.182 0.233 0.136 0.000 0.000 chr10 50300600 50628956
view SGMS2 134 24 90 62 0 0 0.519 0.093 0.349 0.240 0.000 0.000 chr4 107819932 107920047
view SGO1 214 81 41 22 0 0 0.829 0.314 0.159 0.085 0.000 0.000 chr3 20164484 20191206
view SGO2 191 65 57 35 0 0 0.740 0.252 0.221 0.136 0.000 0.000 chr2 200521207 200589096
view SGPL1 200 71 51 33 0 0 0.775 0.275 0.198 0.128 0.000 0.000 chr10 70810948 70886184
view SGPP1 143 34 96 61 0 0 0.554 0.132 0.372 0.236 0.000 0.000 chr14 63679216 63733065
view SGPP2 135 42 61 36 0 0 0.523 0.163 0.236 0.140 0.000 0.000 chr2 222419543 222567621
view SGSH 209 71 44 33 1 0 0.810 0.275 0.171 0.128 0.004 0.000 chr17 80204276 80225333
view SGSM1 168 40 51 36 0 0 0.651 0.155 0.198 0.140 0.000 0.000 chr22 24801211 24932578
view SGSM2 210 71 34 21 0 0 0.814 0.275 0.132 0.081 0.000 0.000 chr17 2332501 2386054
view SGSM3 145 39 94 55 0 0 0.562 0.151 0.364 0.213 0.000 0.000 chr22 40365594 40415289
view SGTA 197 64 44 31 0 0 0.764 0.248 0.171 0.120 0.000 0.000 chr19 2749715 2788273
view SGTB 179 60 67 37 0 0 0.694 0.233 0.260 0.143 0.000 0.000 chr5 65660928 65727109
view SH2B1 189 70 63 32 0 0 0.733 0.271 0.244 0.124 0.000 0.000 chr16 28858843 28879205
view SH2B2 202 66 39 26 0 0 0.783 0.256 0.151 0.101 0.000 0.000 chr7 102281868 102326711
view SH2B3 162 60 86 39 0 0 0.628 0.233 0.333 0.151 0.000 0.000 chr12 111400923 111456623
view SH2D1A 96 29 149 66 0 0 0.372 0.112 0.578 0.256 0.000 0.000 chrX 124341563 124378160
view SH2D1B 211 81 42 22 0 0 0.818 0.314 0.163 0.085 0.000 0.000 chr1 162390268 162417136
view SH2D2A 204 61 52 42 0 0 0.791 0.236 0.202 0.163 0.000 0.000 chr1 156801243 156821848
view SH2D3A 189 58 57 38 1 0 0.733 0.225 0.221 0.147 0.004 0.000 chr19 6747160 6772435
view SH2D3C 165 52 75 41 0 0 0.640 0.202 0.291 0.159 0.000 0.000 chr9 127733317 127783666
view SH2D4A 176 45 45 34 0 0 0.682 0.174 0.174 0.132 0.000 0.000 chr8 19308693 19401218
view SH2D4B 160 45 65 44 0 0 0.620 0.174 0.252 0.171 0.000 0.000 chr10 80532902 80651560
view SH2D5 204 64 49 37 0 0 0.791 0.248 0.190 0.143 0.000 0.000 chr1 20714731 20737703
view SH2D6 208 71 41 26 0 0 0.806 0.275 0.159 0.101 0.000 0.000 chr2 85413714 85442029
view SH2D7 215 71 39 30 0 0 0.833 0.275 0.151 0.116 0.000 0.000 chr15 78087561 78109362
view SH3BGRL2 173 51 65 44 0 0 0.671 0.198 0.252 0.171 0.000 0.000 chr6 79626329 79708655
view SH3BGRL3 210 70 44 31 1 1 0.814 0.271 0.171 0.120 0.004 0.004 chr1 26275086 26286522
view SH3BGRL 56 8 181 84 0 0 0.217 0.031 0.702 0.326 0.000 0.000 chrX 81197102 81303547
view SH3BGR 150 39 85 57 0 0 0.581 0.151 0.329 0.221 0.000 0.000 chr21 39446970 39520504
view SH3BP1 205 67 44 29 1 1 0.795 0.260 0.171 0.112 0.004 0.004 chr22 37634669 37661117