Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SIRPA 208 71 36 27 0 0 0.806 0.275 0.140 0.105 0.000 0.000 chr20 1890407 1945592
view SIRPB1 181 57 68 40 0 0 0.702 0.221 0.264 0.155 0.000 0.000 chr20 1556385 1625009
view SIRPB2 185 62 66 37 0 0 0.717 0.240 0.256 0.143 0.000 0.000 chr20 1469578 1496420
view SIRPD 194 66 57 32 0 0 0.752 0.256 0.221 0.124 0.000 0.000 chr20 1529251 1562705
view SIRPG 197 65 52 35 0 0 0.764 0.252 0.202 0.136 0.000 0.000 chr20 1624152 1662779
view SIRT1 204 72 46 27 0 0 0.791 0.279 0.178 0.105 0.000 0.000 chr10 67879656 67923390
view SIRT2 212 77 39 22 0 0 0.822 0.298 0.151 0.085 0.000 0.000 chr19 38873560 38904618
view SIRT3 206 65 45 35 0 0 0.798 0.252 0.174 0.136 0.000 0.000 chr11 210030 241342
view SIRT4 189 58 61 41 0 0 0.733 0.225 0.236 0.159 0.000 0.000 chr12 120297321 120318249
view SIRT5 196 70 49 29 0 0 0.760 0.271 0.190 0.112 0.000 0.000 chr6 13569601 13620158
view SIRT6 204 69 48 30 1 1 0.791 0.267 0.186 0.116 0.004 0.004 chr19 4169109 4187563
view SIRT7 170 59 81 40 1 0 0.659 0.229 0.314 0.155 0.004 0.000 chr17 81906939 81923176
view SIT1 216 79 36 22 0 0 0.837 0.306 0.140 0.085 0.000 0.000 chr9 35644295 35655931
view SIVA1 208 74 45 27 0 0 0.806 0.287 0.174 0.105 0.000 0.000 chr14 104748147 104764654
view SIX1 195 73 57 30 0 0 0.756 0.283 0.221 0.116 0.000 0.000 chr14 60638421 60654477
view SIX2 219 78 38 26 0 0 0.849 0.302 0.147 0.101 0.000 0.000 chr2 45000182 45014452
view SIX3 223 80 30 20 0 0 0.864 0.310 0.116 0.078 0.000 0.000 chr2 44936702 44951071
view SIX4 177 68 73 35 1 0 0.686 0.264 0.283 0.136 0.004 0.000 chr14 60704539 60729351
view SIX5 206 69 47 33 0 0 0.798 0.267 0.182 0.128 0.000 0.000 chr19 45759785 45774252
view SIX6 195 83 59 20 2 1 0.756 0.322 0.229 0.078 0.008 0.004 chr14 60504146 60517850
view SI 132 33 88 57 0 0 0.512 0.128 0.341 0.221 0.000 0.000 chr3 164973898 165083496
view SKA1 193 69 60 32 1 0 0.748 0.267 0.233 0.124 0.004 0.000 chr18 50370046 50399168
view SKA2 146 36 92 55 0 0 0.566 0.140 0.357 0.213 0.000 0.000 chr17 59104857 59160186
view SKA3 188 60 59 34 0 0 0.729 0.233 0.229 0.132 0.000 0.000 chr13 21148595 21181552
view SKAP1 145 46 78 45 0 0 0.562 0.178 0.302 0.174 0.000 0.000 chr17 48128442 48435214
view SKAP2 147 50 86 46 0 0 0.570 0.194 0.333 0.178 0.000 0.000 chr7 26662068 26869590
view SKIC2 226 84 28 18 2 1 0.876 0.326 0.109 0.070 0.008 0.004 chr6 31954175 31974751
view SKIC3 175 65 72 37 0 0 0.678 0.252 0.279 0.143 0.000 0.000 chr5 95458894 95559977
view SKIC8 217 78 37 23 0 0 0.841 0.302 0.143 0.089 0.000 0.000 chr15 78278235 78304609
view SKIDA1 114 17 130 80 0 0 0.442 0.066 0.504 0.310 0.000 0.000 chr10 21508475 21530682
view SKIL 180 57 54 30 0 0 0.698 0.221 0.209 0.116 0.000 0.000 chr3 170352715 170401835
view SKI 164 49 54 30 0 0 0.636 0.190 0.209 0.116 0.000 0.000 chr1 2223319 2315213
view SKOR1 213 73 44 31 0 0 0.826 0.283 0.171 0.120 0.000 0.000 chr15 67820509 67839582
view SKOR2 171 54 78 47 0 0 0.663 0.209 0.302 0.182 0.000 0.000 chr18 47201169 47256660
view SKP1 179 61 65 36 0 0 0.694 0.236 0.252 0.140 0.000 0.000 chr5 134143935 134181950
view SKP2 200 74 52 30 0 0 0.775 0.287 0.202 0.116 0.000 0.000 chr5 36147111 36189319
view SLA2 179 52 61 39 0 0 0.694 0.202 0.236 0.151 0.000 0.000 chr20 36607318 36651196
view SLAIN1 149 40 87 46 0 0 0.578 0.155 0.337 0.178 0.000 0.000 chr13 77692687 77769229
view SLAIN2 173 57 66 38 0 0 0.671 0.221 0.256 0.147 0.000 0.000 chr4 48336529 48431201
view SLAMF1 209 74 41 23 0 0 0.810 0.287 0.159 0.089 0.000 0.000 chr1 160603106 160652044
view SLAMF6 196 64 39 23 0 0 0.760 0.248 0.151 0.089 0.000 0.000 chr1 160480036 160528255
view SLAMF7 219 80 32 19 1 0 0.849 0.310 0.124 0.074 0.004 0.000 chr1 160734247 160759821
view SLAMF8 237 87 20 17 0 0 0.919 0.337 0.078 0.066 0.000 0.000 chr1 159821873 159842492
view SLAMF9 192 55 62 48 2 1 0.744 0.213 0.240 0.186 0.008 0.004 chr1 159946492 159959237
view SLA 171 44 73 54 0 0 0.663 0.171 0.283 0.209 0.000 0.000 chr8 133031728 133107602
view SLBP 187 58 62 40 0 0 0.725 0.225 0.240 0.155 0.000 0.000 chr4 1687731 1717319
view SLC10A1 169 49 73 43 0 0 0.655 0.190 0.283 0.167 0.000 0.000 chr14 69770416 69802241
view SLC10A2 213 76 41 25 0 0 0.826 0.295 0.159 0.097 0.000 0.000 chr13 103038998 103071417
view SLC10A3 94 22 156 75 0 0 0.364 0.085 0.605 0.291 0.000 0.000 chrX 154482311 154495629
view SLC10A4 195 65 60 37 0 0 0.756 0.252 0.233 0.143 0.000 0.000 chr4 48478343 48494526