Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SH3BP2 188 48 54 43 0 0 0.729 0.186 0.209 0.167 0.000 0.000 chr4 2788085 2846096
view SH3BP4 173 47 52 36 0 0 0.671 0.182 0.202 0.140 0.000 0.000 chr2 234947017 235060714
view SH3BP5L 205 76 49 26 0 0 0.795 0.295 0.190 0.101 0.000 0.000 chr1 248805446 248830915
view SH3BP5 187 55 47 30 0 0 0.725 0.213 0.182 0.116 0.000 0.000 chr3 15249353 15337586
view SH3D19 140 38 74 41 0 0 0.543 0.147 0.287 0.159 0.000 0.000 chr4 151115281 151330605
view SH3D21 187 49 64 49 0 0 0.725 0.190 0.248 0.190 0.000 0.000 chr1 36301368 36326347
view SH3GL1 178 45 66 48 0 0 0.690 0.174 0.256 0.186 0.000 0.000 chr19 4355370 4405547
view SH3GL2 129 33 60 35 0 0 0.500 0.128 0.233 0.136 0.000 0.000 chr9 17574066 17802124
view SH3GL3 161 59 56 26 0 0 0.624 0.229 0.217 0.101 0.000 0.000 chr15 83442341 83623743
view SH3GLB1 158 43 85 55 0 0 0.612 0.167 0.329 0.213 0.000 0.000 chr1 86699576 86753184
view SH3GLB2 217 77 37 24 0 0 0.841 0.298 0.143 0.093 0.000 0.000 chr9 129002036 129033331
view SH3KBP1 40 2 193 85 0 0 0.155 0.008 0.748 0.329 0.000 0.000 chrX 19528977 19892600
view SH3PXD2A 124 30 74 43 0 0 0.481 0.116 0.287 0.167 0.000 0.000 chr10 103589027 103860576
view SH3PXD2B 139 35 89 56 0 0 0.539 0.136 0.345 0.217 0.000 0.000 chr5 172328499 172459525
view SH3RF1 107 20 112 67 0 0 0.415 0.078 0.434 0.260 0.000 0.000 chr4 169089259 169275956
view SH3RF2 135 32 76 44 0 0 0.523 0.124 0.295 0.171 0.000 0.000 chr5 145931578 146068292
view SH3RF3 86 12 84 52 0 0 0.333 0.047 0.326 0.202 0.000 0.000 chr2 109124205 109509634
view SH3TC1 186 45 55 44 0 0 0.721 0.174 0.213 0.171 0.000 0.000 chr4 8194290 8246103
view SH3TC2 162 50 83 50 0 0 0.628 0.194 0.322 0.194 0.000 0.000 chr5 148977150 149068062
view SH3YL1 179 51 63 42 0 0 0.694 0.198 0.244 0.163 0.000 0.000 chr2 213144 269032
view SHANK1 157 31 69 47 0 0 0.609 0.120 0.267 0.182 0.000 0.000 chr19 50654255 50724802
view SHANK2 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr11 70462854 71257577
view SHARPIN 166 36 85 62 0 0 0.643 0.140 0.329 0.240 0.000 0.000 chr8 144093637 144108773
view SHBG 215 77 42 27 0 0 0.833 0.298 0.163 0.105 0.000 0.000 chr17 7625135 7638372
view SHB 164 45 59 40 0 0 0.636 0.174 0.229 0.155 0.000 0.000 chr9 37910898 38074227
view SHC1 146 31 106 68 0 0 0.566 0.120 0.411 0.264 0.000 0.000 chr1 154957298 154975747
view SHC2 105 24 102 42 0 0 0.407 0.093 0.395 0.163 0.000 0.000 chr19 411589 466033
view SHC3 93 3 108 73 0 0 0.360 0.012 0.419 0.283 0.000 0.000 chr9 89000771 89183818
view SHC4 191 65 41 26 0 0 0.740 0.252 0.159 0.101 0.000 0.000 chr15 48818741 48968919
view SHCBP1L 150 41 77 44 0 0 0.581 0.159 0.298 0.171 0.000 0.000 chr1 182894865 182958166
view SHCBP1 91 11 139 80 0 0 0.353 0.043 0.539 0.310 0.000 0.000 chr16 46573591 46626379
view SHD 230 79 20 18 0 0 0.891 0.306 0.078 0.070 0.000 0.000 chr19 4274266 4295722
view SHE 190 67 57 35 0 0 0.736 0.260 0.221 0.136 0.000 0.000 chr1 154474481 154507412
view SHFL 221 80 32 20 1 1 0.857 0.310 0.124 0.078 0.004 0.004 chr19 10081317 10098243
view SHF 198 68 54 33 0 0 0.767 0.264 0.209 0.128 0.000 0.000 chr15 45162214 45192966
view SHH 206 64 43 33 0 0 0.798 0.248 0.167 0.128 0.000 0.000 chr7 155794980 155817463
view SHISA2 227 82 29 21 2 2 0.880 0.318 0.112 0.081 0.008 0.008 chr13 26039597 26057016
view SHISA3 207 64 50 40 0 0 0.802 0.248 0.194 0.155 0.000 0.000 chr4 42392488 42407487
view SHISA4 208 70 46 32 1 0 0.806 0.271 0.178 0.124 0.004 0.000 chr1 201883898 201897587
view SHISA5 144 36 93 53 0 0 0.558 0.140 0.360 0.205 0.000 0.000 chr3 48462876 48509174
view SHISA6 95 13 100 57 0 0 0.368 0.050 0.388 0.221 0.000 0.000 chr17 11236213 11569063
view SHISA7 185 50 66 48 0 0 0.717 0.194 0.256 0.186 0.000 0.000 chr19 55423740 55448300
view SHISA8 187 58 67 43 0 0 0.725 0.225 0.260 0.167 0.000 0.000 chr22 41904543 41920074
view SHISA9 107 17 72 38 0 0 0.415 0.066 0.279 0.147 0.000 0.000 chr16 12896598 13245416
view SHISAL1 189 61 48 29 0 0 0.733 0.236 0.186 0.112 0.000 0.000 chr22 44238665 44317951
view SHISAL2A 221 79 29 20 0 0 0.857 0.306 0.112 0.078 0.000 0.000 chr1 52628168 52662065
view SHISAL2B 194 62 55 37 0 0 0.752 0.240 0.213 0.143 0.000 0.000 chr5 64685503 64723190
view SHKBP1 195 59 57 41 0 0 0.756 0.229 0.221 0.159 0.000 0.000 chr19 40571873 40596397
view SHLD1 163 36 47 32 0 0 0.632 0.140 0.182 0.124 0.000 0.000 chr20 5745401 5869395
view SHLD2 169 50 76 48 0 0 0.655 0.194 0.295 0.186 0.000 0.000 chr10 87090206 87196465