Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SHLD3 202 64 53 38 1 1 0.783 0.248 0.205 0.147 0.004 0.004 chr5 65620027 65635928
view SHMT1 109 37 122 51 0 0 0.422 0.143 0.473 0.198 0.000 0.000 chr17 18322873 18368550
view SHMT2 197 61 55 39 1 0 0.764 0.236 0.213 0.151 0.004 0.000 chr12 57224711 57239935
view SHOC1 147 33 87 58 0 0 0.570 0.128 0.337 0.225 0.000 0.000 chr9 111681171 111799937
view SHOC2 192 76 58 25 0 0 0.744 0.295 0.225 0.097 0.000 0.000 chr10 110914604 111018665
view SHOX2 189 59 60 38 0 0 0.733 0.229 0.233 0.147 0.000 0.000 chr3 158090905 158111420
view SHOX 212 73 34 21 0 0 0.822 0.283 0.132 0.081 0.000 0.000 chrX 625791 656584
view SHPK 190 60 53 34 0 0 0.736 0.233 0.205 0.132 0.000 0.000 chr17 3603240 3641250
view SHPRH 176 67 70 35 0 0 0.682 0.260 0.271 0.136 0.000 0.000 chr6 145879807 145969358
view SHQ1 110 26 99 53 0 0 0.426 0.101 0.384 0.205 0.000 0.000 chr3 72744277 72853445
view SHROOM1 197 71 57 31 0 0 0.764 0.275 0.221 0.120 0.000 0.000 chr5 132817141 132835647
view SHROOM2 68 8 157 71 0 0 0.264 0.031 0.609 0.275 0.000 0.000 chrX 9781429 9954443
view SHROOM3 108 34 79 40 0 0 0.419 0.132 0.306 0.155 0.000 0.000 chr4 76430229 76788253
view SHROOM4 24 0 203 94 0 0 0.093 0.000 0.787 0.364 0.000 0.000 chrX 50581796 50819194
view SHTN1 145 46 89 47 0 0 0.562 0.178 0.345 0.182 0.000 0.000 chr10 116876477 117010187
view SIAE 144 39 87 49 0 0 0.558 0.151 0.337 0.190 0.000 0.000 chr11 124628113 124678739
view SIAH1 127 27 115 69 0 0 0.492 0.105 0.446 0.267 0.000 0.000 chr16 48355531 48390413
view SIAH2 172 53 78 48 0 0 0.667 0.205 0.302 0.186 0.000 0.000 chr3 150736125 150768169
view SIAH3 181 45 48 36 0 0 0.702 0.174 0.186 0.140 0.000 0.000 chr13 45772242 45856753
view SIDT1 158 48 74 47 0 0 0.612 0.186 0.287 0.182 0.000 0.000 chr3 113527555 113634575
view SIDT2 214 73 38 27 1 1 0.829 0.283 0.147 0.105 0.004 0.004 chr11 117173743 117202442
view SIGIRR 120 27 85 41 0 0 0.465 0.105 0.329 0.159 0.000 0.000 chr11 400716 419999
view SIGLEC10 209 63 43 36 0 0 0.810 0.244 0.167 0.140 0.000 0.000 chr19 51405020 51422642
view SIGLEC11 225 79 29 22 0 0 0.872 0.306 0.112 0.085 0.000 0.000 chr19 49943985 49966172
view SIGLEC12 215 75 39 26 1 1 0.833 0.291 0.151 0.101 0.004 0.004 chr19 51486227 51506800
view SIGLEC14 149 31 91 60 1 0 0.578 0.120 0.353 0.233 0.004 0.000 chr19 51634478 51651825
view SIGLEC15 206 76 51 29 0 0 0.798 0.295 0.198 0.112 0.000 0.000 chr18 45820675 45849094
view SIGLEC1 213 74 39 27 0 0 0.826 0.287 0.151 0.105 0.000 0.000 chr20 3681970 3717600
view SIGLEC5 206 70 45 30 0 0 0.798 0.271 0.174 0.116 0.000 0.000 chr19 51605960 51635401
view SIGLEC6 208 76 47 27 1 1 0.806 0.295 0.182 0.105 0.004 0.004 chr19 51512819 51536670
view SIGLEC7 201 69 57 36 0 0 0.779 0.267 0.221 0.140 0.000 0.000 chr19 51137301 51158526
view SIGLEC8 225 82 29 20 0 0 0.872 0.318 0.112 0.078 0.000 0.000 chr19 51445997 51463454
view SIGLEC9 220 76 34 25 0 0 0.853 0.295 0.132 0.097 0.000 0.000 chr19 51119906 51135310
view SIGLECL1 197 68 55 33 0 0 0.764 0.264 0.213 0.128 0.000 0.000 chr19 51246080 51274330
view SIGMAR1 218 79 38 25 1 0 0.845 0.306 0.147 0.097 0.004 0.000 chr9 34629722 34642787
view SIK1 16 0 56 8 0 0 0.062 0.000 0.217 0.031 0.000 0.000 chr21 43409483 43432131
view SIK2 98 12 118 72 0 0 0.380 0.047 0.457 0.279 0.000 0.000 chr11 111597449 111735855
view SIK3 182 59 46 26 0 0 0.705 0.229 0.178 0.101 0.000 0.000 chr11 116838402 117103428
view SIKE1 178 53 68 41 0 0 0.690 0.205 0.264 0.159 0.000 0.000 chr1 114764479 114785685
view SIL1 99 28 122 65 0 0 0.384 0.109 0.473 0.252 0.000 0.000 chr5 138941724 139203368
view SIM1 159 51 73 40 0 0 0.616 0.198 0.283 0.155 0.000 0.000 chr6 100380009 100469921
view SIM2 204 59 32 26 0 0 0.791 0.229 0.124 0.101 0.000 0.000 chr21 36694115 36754917
view SIMC1 179 69 64 32 0 0 0.694 0.267 0.248 0.124 0.000 0.000 chr5 176233424 176350989
view SIN3A 161 60 80 35 0 0 0.624 0.233 0.310 0.136 0.000 0.000 chr15 75364379 75456690
view SIN3B 185 61 52 29 0 0 0.717 0.236 0.202 0.112 0.000 0.000 chr19 16824398 16885349
view SINHCAF 174 55 66 38 0 0 0.674 0.213 0.256 0.147 0.000 0.000 chr12 31275584 31331150
view SIPA1L1 86 18 94 51 0 0 0.333 0.070 0.364 0.198 0.000 0.000 chr14 71315476 71746209
view SIPA1L2 145 36 52 40 0 0 0.562 0.140 0.202 0.155 0.000 0.000 chr1 232392965 232635133
view SIPA1L3 81 16 90 47 0 0 0.314 0.062 0.349 0.182 0.000 0.000 chr19 37902208 38213369
view SIPA1 202 72 49 28 0 0 0.783 0.279 0.190 0.109 0.000 0.000 chr11 65633101 65655912