Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SLC10A5 212 82 43 21 1 0 0.822 0.318 0.167 0.081 0.004 0.000 chr8 81688631 81700058
view SLC10A6 174 56 72 42 0 0 0.674 0.217 0.279 0.163 0.000 0.000 chr4 86818468 86854384
view SLC10A7 121 44 73 38 0 0 0.469 0.171 0.283 0.147 0.000 0.000 chr4 146248981 146526940
view SLC11A1 187 50 61 46 0 0 0.725 0.194 0.236 0.178 0.000 0.000 chr2 218377273 218401894
view SLC11A2 184 60 65 40 0 0 0.713 0.233 0.252 0.155 0.000 0.000 chr12 50980992 51031384
view SLC12A1 132 50 99 42 0 0 0.512 0.194 0.384 0.163 0.000 0.000 chr15 48201302 48309078
view SLC12A2 176 66 66 31 0 0 0.682 0.256 0.256 0.120 0.000 0.000 chr5 128078766 128194677
view SLC12A3 209 71 31 22 0 0 0.810 0.275 0.120 0.085 0.000 0.000 chr16 56860207 56920850
view SLC12A4 139 26 101 66 0 0 0.539 0.101 0.391 0.256 0.000 0.000 chr16 67938474 67973637
view SLC12A5 201 69 46 26 0 0 0.779 0.267 0.178 0.101 0.000 0.000 chr20 46024215 46065150
view SLC12A6 136 39 86 43 0 0 0.527 0.151 0.333 0.167 0.000 0.000 chr15 34224784 34342781
view SLC12A7 59 12 93 32 0 0 0.229 0.047 0.360 0.124 0.000 0.000 chr5 1045384 1117063
view SLC12A8 180 53 52 35 0 0 0.698 0.205 0.202 0.136 0.000 0.000 chr3 125077644 125217748
view SLC12A9 211 78 43 25 0 0 0.818 0.302 0.167 0.097 0.000 0.000 chr7 100847713 100872010
view SLC13A1 174 56 61 35 0 0 0.674 0.217 0.236 0.136 0.000 0.000 chr7 123108531 123204969
view SLC13A2 193 58 54 37 0 0 0.748 0.225 0.209 0.143 0.000 0.000 chr17 28468644 28502781
view SLC13A3 194 61 33 23 0 0 0.752 0.236 0.128 0.089 0.000 0.000 chr20 46552828 46656459
view SLC13A4 185 63 60 34 0 0 0.717 0.244 0.233 0.132 0.000 0.000 chr7 135676231 135733186
view SLC13A5 226 84 30 20 0 0 0.876 0.326 0.116 0.078 0.000 0.000 chr17 6679719 6718369
view SLC14A1 208 76 44 24 0 0 0.806 0.295 0.171 0.093 0.000 0.000 chr18 45719181 45757520
view SLC14A2 200 70 36 21 0 0 0.775 0.271 0.140 0.081 0.000 0.000 chr18 45610476 45688688
view SLC15A1 203 69 36 21 0 0 0.787 0.267 0.140 0.081 0.000 0.000 chr13 98678801 98757672
view SLC15A2 168 43 77 53 0 0 0.651 0.167 0.298 0.205 0.000 0.000 chr3 121889401 121949188
view SLC15A3 190 64 65 39 0 0 0.736 0.248 0.252 0.151 0.000 0.000 chr11 60932084 60957176
view SLC15A4 208 70 42 29 0 0 0.806 0.271 0.163 0.112 0.000 0.000 chr12 128788194 128828958
view SLC15A5 161 47 79 52 0 0 0.624 0.182 0.306 0.202 0.000 0.000 chr12 16183485 16282685
view SLC16A10 124 24 114 72 0 0 0.481 0.093 0.442 0.279 0.000 0.000 chr6 111082503 111236194
view SLC16A11 209 67 45 35 0 0 0.810 0.260 0.174 0.136 0.000 0.000 chr17 7036621 7049092
view SLC16A12 145 43 67 39 0 0 0.562 0.167 0.260 0.151 0.000 0.000 chr10 89425299 89540594
view SLC16A13 212 66 42 36 0 0 0.822 0.256 0.163 0.140 0.000 0.000 chr17 7031015 7045117
view SLC16A14 209 66 40 32 0 0 0.810 0.256 0.155 0.124 0.000 0.000 chr2 230029982 230073924
view SLC16A1 172 58 72 41 0 0 0.667 0.225 0.279 0.159 0.000 0.000 chr1 112906847 112961196
view SLC16A2 53 1 193 97 0 0 0.205 0.004 0.748 0.376 0.000 0.000 chrX 74416493 74538916
view SLC16A3 204 59 47 40 0 0 0.791 0.229 0.182 0.155 0.000 0.000 chr17 82224042 82245086
view SLC16A4 215 83 39 20 0 0 0.833 0.322 0.151 0.078 0.000 0.000 chr1 110357857 110396026
view SLC16A5 208 67 47 35 0 0 0.806 0.260 0.182 0.136 0.000 0.000 chr17 75082954 75111162
view SLC16A6 203 62 46 35 0 0 0.787 0.240 0.178 0.136 0.000 0.000 chr17 68262026 68296127
view SLC16A7 129 39 78 43 0 0 0.500 0.151 0.302 0.167 0.000 0.000 chr12 59591029 59794841
view SLC16A8 225 78 30 24 0 0 0.872 0.302 0.116 0.093 0.000 0.000 chr22 38073137 38089184
view SLC16A9 175 55 70 41 0 0 0.678 0.213 0.271 0.159 0.000 0.000 chr10 59645764 59714850
view SLC17A1 173 50 75 50 1 1 0.671 0.194 0.291 0.194 0.004 0.004 chr6 25777915 25837052
view SLC17A2 189 59 65 43 0 0 0.733 0.229 0.252 0.167 0.000 0.000 chr6 25907754 25935691
view SLC17A3 183 56 68 44 0 0 0.709 0.217 0.264 0.171 0.000 0.000 chr6 25839856 25879243
view SLC17A4 182 55 69 47 0 0 0.705 0.213 0.267 0.182 0.000 0.000 chr6 25749742 25786199
view SLC17A5 161 54 73 38 0 0 0.624 0.209 0.283 0.147 0.000 0.000 chr6 73588379 73658992
view SLC17A6 224 82 26 17 0 0 0.868 0.318 0.101 0.066 0.000 0.000 chr11 22333381 22384503
view SLC17A7 206 68 47 32 0 0 0.798 0.264 0.182 0.124 0.000 0.000 chr19 49424401 49446527
view SLC17A8 156 49 75 42 0 0 0.605 0.190 0.291 0.163 0.000 0.000 chr12 100352074 100427055
view SLC17A9 215 73 38 27 0 0 0.833 0.283 0.147 0.105 0.000 0.000 chr20 62947709 62974585
view SLC18A1 216 79 31 17 0 0 0.837 0.306 0.120 0.066 0.000 0.000 chr8 20139855 20188136