Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SESN1 91 18 138 76 0 0 0.353 0.070 0.535 0.295 0.000 0.000 chr6 108979309 109099846
view SESN2 169 50 70 39 0 0 0.655 0.194 0.271 0.151 0.000 0.000 chr1 28254518 28287491
view SESN3 195 70 48 26 0 0 0.756 0.271 0.186 0.101 0.000 0.000 chr11 95160513 95236202
view SESTD1 136 36 103 59 0 0 0.527 0.140 0.399 0.229 0.000 0.000 chr2 179096678 179269832
view SETBP1 69 9 110 63 0 0 0.267 0.035 0.426 0.244 0.000 0.000 chr18 44675888 45073510
view SETD1A 136 29 105 63 0 0 0.527 0.112 0.407 0.244 0.000 0.000 chr16 30952754 30989664
view SETD1B 130 25 88 49 0 0 0.504 0.097 0.341 0.190 0.000 0.000 chr12 121799009 121837656
view SETD2 153 45 95 52 0 0 0.593 0.174 0.368 0.202 0.000 0.000 chr3 47011436 47169113
view SETD3 144 50 88 46 0 0 0.558 0.194 0.341 0.178 0.000 0.000 chr14 99392748 99485859
view SETD4 198 68 55 32 0 0 0.767 0.264 0.213 0.124 0.000 0.000 chr21 36029541 36065526
view SETD5 119 28 105 58 0 0 0.461 0.109 0.407 0.225 0.000 0.000 chr3 9392615 9483154
view SETD6 212 77 44 27 0 0 0.822 0.298 0.171 0.105 0.000 0.000 chr16 58510517 58528842
view SETD7 157 33 72 51 0 0 0.609 0.128 0.279 0.198 0.000 0.000 chr4 139501038 139561219
view SETD9 212 80 45 24 1 1 0.822 0.310 0.174 0.093 0.004 0.004 chr5 56904596 56922348
view SETDB1 175 58 71 40 0 0 0.678 0.225 0.275 0.155 0.000 0.000 chr1 150921363 150969737
view SETDB2 202 76 45 24 0 0 0.783 0.295 0.174 0.093 0.000 0.000 chr13 49439274 49500003
view SETMAR 223 87 31 15 2 1 0.864 0.337 0.120 0.058 0.008 0.004 chr3 4298369 4322265
view SETSIP 181 57 72 43 0 0 0.702 0.221 0.279 0.167 0.000 0.000 chr1 92069533 92080411
view SETX 180 72 53 24 0 0 0.698 0.279 0.205 0.093 0.000 0.000 chr9 132256356 132359986
view SET 197 71 54 27 0 0 0.764 0.275 0.209 0.105 0.000 0.000 chr9 128684222 128701396
view SEZ6L2 153 49 90 47 0 0 0.593 0.190 0.349 0.182 0.000 0.000 chr16 29866159 29904550
view SEZ6L 119 21 85 51 0 0 0.461 0.081 0.329 0.198 0.000 0.000 chr22 26164462 26388596
view SEZ6 149 40 91 55 0 0 0.578 0.155 0.353 0.213 0.000 0.000 chr17 28949905 29011033
view SF1 170 57 82 44 0 0 0.659 0.221 0.318 0.171 0.000 0.000 chr11 64759606 64783542
view SF3A1 200 62 50 37 1 1 0.775 0.240 0.194 0.143 0.004 0.004 chr22 30326988 30361894
view SF3A2 209 65 39 30 0 0 0.810 0.252 0.151 0.116 0.000 0.000 chr19 2231824 2253655
view SF3A3 199 68 49 30 0 0 0.771 0.264 0.190 0.116 0.000 0.000 chr1 37951975 37995022
view SF3B1 171 62 73 35 0 0 0.663 0.240 0.283 0.136 0.000 0.000 chr2 197384784 197440028
view SF3B2 196 71 59 31 0 0 0.760 0.275 0.229 0.120 0.000 0.000 chr11 66047364 66074308
view SF3B3 170 65 73 35 0 0 0.659 0.252 0.283 0.136 0.000 0.000 chr16 70518816 70582668
view SF3B4 174 54 79 46 0 0 0.674 0.209 0.306 0.178 0.000 0.000 chr1 149918317 149932803
view SF3B5 220 81 38 24 0 0 0.853 0.314 0.147 0.093 0.000 0.000 chr6 144089884 144100573
view SF3B6 174 48 81 54 0 0 0.674 0.186 0.314 0.209 0.000 0.000 chr2 24062586 24081326
view SFI1 160 50 71 42 0 0 0.620 0.194 0.275 0.163 0.000 0.000 chr22 31491536 31623588
view SFMBT1 163 50 70 39 0 0 0.632 0.194 0.271 0.151 0.000 0.000 chr3 52898572 53051073
view SFMBT2 71 3 120 67 0 0 0.275 0.012 0.465 0.260 0.000 0.000 chr10 7153624 7416034
view SFN 165 40 87 61 1 0 0.640 0.155 0.337 0.236 0.004 0.000 chr1 26858149 26869456
view SFPQ 189 74 64 27 1 0 0.733 0.287 0.248 0.105 0.004 0.000 chr1 35177936 35198145
view SFR1 212 78 45 26 0 0 0.822 0.302 0.174 0.101 0.000 0.000 chr10 104117171 104131383
view SFRP1 191 60 48 34 0 0 0.740 0.233 0.186 0.132 0.000 0.000 chr8 41256962 41314473
view SFRP2 216 86 40 19 2 0 0.837 0.333 0.155 0.074 0.008 0.000 chr4 153775591 153794083
view SFRP4 235 89 22 15 1 1 0.911 0.345 0.085 0.058 0.004 0.004 chr7 37900932 37921817
view SFRP5 189 63 64 39 1 0 0.733 0.244 0.248 0.151 0.004 0.000 chr10 97761751 97776999
view SFSWAP 158 40 83 55 0 0 0.612 0.155 0.322 0.213 0.000 0.000 chr12 131706090 131804738
view SFT2D1 193 57 57 41 0 0 0.748 0.221 0.221 0.159 0.000 0.000 chr6 166314728 166347545
view SFT2D2 175 62 71 34 0 0 0.678 0.240 0.275 0.132 0.000 0.000 chr1 168221004 168258021
view SFT2D3 192 60 63 44 1 0 0.744 0.233 0.244 0.171 0.004 0.000 chr2 127696497 127710242
view SFTA2 217 78 38 25 1 0 0.841 0.302 0.147 0.097 0.004 0.000 chr6 30926353 30937170
view SFTPA1 235 90 22 15 0 0 0.911 0.349 0.085 0.058 0.000 0.000 chr10 79605939 79620443
view SFTPA2 235 94 20 9 2 1 0.911 0.364 0.078 0.035 0.008 0.004 chr10 79550852 79565407