Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SEC14L2 209 69 44 32 0 0 0.810 0.267 0.171 0.124 0.000 0.000 chr22 30392018 30430303
view SEC14L3 226 78 31 26 0 0 0.876 0.302 0.120 0.101 0.000 0.000 chr22 30454229 30477017
view SEC14L4 211 66 39 31 1 1 0.818 0.256 0.151 0.120 0.004 0.004 chr22 30483902 30510695
view SEC14L5 187 56 52 37 0 0 0.725 0.217 0.202 0.143 0.000 0.000 chr16 4953330 5024157
view SEC14L6 197 59 51 36 0 0 0.764 0.229 0.198 0.140 0.000 0.000 chr22 30517799 30551741
view SEC16A 152 31 85 59 0 0 0.589 0.120 0.329 0.229 0.000 0.000 chr9 136435105 136488040
view SEC16B 203 71 44 30 0 0 0.787 0.275 0.171 0.116 0.000 0.000 chr1 177923788 177975058
view SEC22A 169 54 72 39 0 0 0.655 0.209 0.279 0.151 0.000 0.000 chr3 123196943 123279136
view SEC22B 189 66 65 36 0 0 0.733 0.256 0.252 0.140 0.000 0.000 chr1 120145898 120181520
view SEC22C 196 65 49 30 0 0 0.760 0.252 0.190 0.116 0.000 0.000 chr3 42542969 42586967
view SEC23A 182 60 55 34 0 0 0.705 0.233 0.213 0.132 0.000 0.000 chr14 39026919 39108235
view SEC23B 204 70 45 30 0 0 0.791 0.271 0.174 0.116 0.000 0.000 chr20 18502940 18566415
view SEC23IP 199 67 47 29 0 0 0.771 0.260 0.182 0.112 0.000 0.000 chr10 119887730 119949657
view SEC24A 158 55 74 34 0 0 0.612 0.213 0.287 0.132 0.000 0.000 chr5 134643785 134732909
view SEC24B 110 23 107 61 0 0 0.426 0.089 0.415 0.236 0.000 0.000 chr4 109428815 109545896
view SEC24C 160 58 82 39 0 0 0.620 0.225 0.318 0.151 0.000 0.000 chr10 73739372 73777161
view SEC24D 149 50 71 42 0 0 0.578 0.194 0.275 0.163 0.000 0.000 chr4 118717823 118841126
view SEC31A 163 62 81 37 0 0 0.632 0.240 0.314 0.143 0.000 0.000 chr4 82813509 82896153
view SEC31B 148 45 99 52 0 0 0.574 0.174 0.384 0.202 0.000 0.000 chr10 100481647 100524861
view SEC61A1 190 68 60 33 0 0 0.736 0.264 0.233 0.128 0.000 0.000 chr3 128047437 128076683
view SEC61A2 179 59 69 40 0 0 0.694 0.229 0.267 0.155 0.000 0.000 chr10 12124677 12170407
view SEC61B 174 55 80 46 0 0 0.674 0.213 0.310 0.178 0.000 0.000 chr9 99217282 99235615
view SEC61G 202 73 54 31 1 0 0.783 0.283 0.209 0.120 0.004 0.000 chr7 54747253 54764211
view SEC62 167 58 76 37 0 0 0.647 0.225 0.295 0.143 0.000 0.000 chr3 169961807 170003373
view SEC63 165 57 75 40 0 0 0.640 0.221 0.291 0.155 0.000 0.000 chr6 107862756 107963208
view SECISBP2L 188 64 57 32 0 0 0.729 0.248 0.221 0.124 0.000 0.000 chr15 48983638 49051446
view SECISBP2 189 64 56 31 0 0 0.733 0.248 0.217 0.120 0.000 0.000 chr9 89313500 89364663
view SECTM1 186 51 61 46 0 0 0.721 0.198 0.236 0.178 0.000 0.000 chr17 82316024 82338766
view SEH1L 193 62 54 37 0 0 0.748 0.240 0.209 0.143 0.000 0.000 chr18 12943011 12992531
view SEL1L2 161 56 69 34 0 0 0.624 0.217 0.267 0.132 0.000 0.000 chr20 13844247 13995614
view SEL1L3 155 40 62 46 0 0 0.601 0.155 0.240 0.178 0.000 0.000 chr4 25742433 25867988
view SEL1L 179 57 68 43 0 0 0.694 0.221 0.264 0.167 0.000 0.000 chr14 81466547 81538853
view SELENBP1 218 76 36 26 0 0 0.845 0.295 0.140 0.101 0.000 0.000 chr1 151359304 151377705
view SELENOF 112 19 117 67 0 0 0.434 0.074 0.453 0.260 0.000 0.000 chr1 86857445 86919126
view SELENOH 183 57 70 44 0 0 0.709 0.221 0.271 0.171 0.000 0.000 chr11 57736491 57748550
view SELENOI 166 47 79 50 0 0 0.643 0.182 0.306 0.194 0.000 0.000 chr2 26341143 26400885
view SELENOK 210 80 44 24 2 1 0.814 0.310 0.171 0.093 0.008 0.004 chr3 53879417 53896859
view SELENOM 188 52 63 48 1 0 0.729 0.202 0.244 0.186 0.004 0.000 chr22 31099777 31112568
view SELENON 195 63 55 36 0 0 0.756 0.244 0.213 0.140 0.000 0.000 chr1 25795193 25823221
view SELENOO 218 79 34 20 0 0 0.845 0.306 0.132 0.078 0.000 0.000 chr22 50196011 50222616
view SELENOP 197 72 57 30 0 0 0.764 0.279 0.221 0.116 0.000 0.000 chr5 42794880 42816892
view SELENOS 223 80 32 22 1 1 0.864 0.310 0.124 0.085 0.004 0.004 chr15 101267191 101282485
view SELENOT 189 63 61 37 0 0 0.733 0.244 0.236 0.143 0.000 0.000 chr3 150598321 150635436
view SELENOV 217 80 39 23 0 0 0.841 0.310 0.151 0.089 0.000 0.000 chr19 39510139 39525675
view SELENOW 202 65 52 36 0 0 0.783 0.252 0.202 0.140 0.000 0.000 chr19 47773703 47789682
view SELE 218 82 38 21 0 0 0.845 0.318 0.147 0.081 0.000 0.000 chr1 169717640 169739079
view SELL 215 74 41 29 0 0 0.833 0.287 0.159 0.112 0.000 0.000 chr1 169685667 169716620
view SELPLG 242 93 16 12 0 0 0.938 0.360 0.062 0.047 0.000 0.000 chr12 108616895 108638894
view SELP 162 46 71 44 0 0 0.628 0.178 0.275 0.171 0.000 0.000 chr1 169583849 169635124
view SEM1 177 49 79 55 0 0 0.686 0.190 0.306 0.213 0.000 0.000 chr7 96683762 96714846