Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SCT 205 62 44 35 1 1 0.795 0.240 0.171 0.136 0.004 0.004 chr11 621309 632181
view SCUBE1 139 27 68 46 0 0 0.539 0.105 0.264 0.178 0.000 0.000 chr22 43192280 43348372
view SCUBE2 178 53 53 33 0 0 0.690 0.205 0.205 0.128 0.000 0.000 chr11 9014476 9096599
view SCUBE3 144 46 89 46 0 0 0.558 0.178 0.345 0.178 0.000 0.000 chr6 35208956 35258079
view SCX 219 73 33 27 1 0 0.849 0.283 0.128 0.105 0.004 0.000 chr8 144261453 144273481
view SCYGR1 226 82 27 20 1 0 0.876 0.318 0.105 0.078 0.004 0.000 chr2 227382683 227392949
view SCYGR2 234 87 22 17 0 0 0.907 0.337 0.085 0.066 0.000 0.000 chr2 227593893 227604255
view SCYGR3 231 87 26 17 0 0 0.895 0.337 0.101 0.066 0.000 0.000 chr2 227609538 227619840
view SCYGR4 228 85 30 20 0 0 0.884 0.329 0.116 0.078 0.000 0.000 chr2 227612498 227622815
view SCYGR5 229 82 28 22 0 0 0.888 0.318 0.109 0.085 0.000 0.000 chr2 227661804 227672061
view SCYGR6 227 84 30 20 0 0 0.880 0.326 0.116 0.078 0.000 0.000 chr2 227719440 227729757
view SCYGR7 227 83 29 21 1 1 0.880 0.322 0.112 0.081 0.004 0.004 chr2 227723335 227733625
view SCYGR8 228 85 26 17 1 1 0.884 0.329 0.101 0.066 0.004 0.004 chr2 227740894 227751220
view SCYL1 138 40 101 53 0 0 0.535 0.155 0.391 0.205 0.000 0.000 chr11 65520083 65543704
view SCYL2 109 24 116 58 0 0 0.422 0.093 0.450 0.225 0.000 0.000 chr12 100262177 100346715
view SCYL3 208 75 46 28 0 0 0.806 0.291 0.178 0.109 0.000 0.000 chr1 169844631 169898896
view SDAD1 187 69 60 29 0 0 0.725 0.267 0.233 0.112 0.000 0.000 chr4 75944915 75995945
view SDC1 205 66 45 32 0 0 0.795 0.256 0.174 0.124 0.000 0.000 chr2 20195797 20230130
view SDC2 166 52 51 31 0 0 0.643 0.202 0.198 0.120 0.000 0.000 chr8 96488813 96616790
view SDC3 192 56 49 34 0 0 0.744 0.217 0.190 0.132 0.000 0.000 chr1 30864466 30913758
view SDC4 208 76 40 21 0 0 0.806 0.295 0.155 0.081 0.000 0.000 chr20 45320288 45353424
view SDCBP2 214 73 35 24 0 0 0.829 0.283 0.136 0.093 0.000 0.000 chr20 1304909 1334139
view SDCBP 193 73 57 29 0 0 0.748 0.283 0.221 0.112 0.000 0.000 chr8 58548261 58587858
view SDCCAG8 94 13 103 65 0 0 0.364 0.050 0.399 0.252 0.000 0.000 chr1 243251041 243505091
view SDE2 200 70 50 27 0 0 0.775 0.271 0.194 0.105 0.000 0.000 chr1 225977702 226004343
view SDF2L1 214 72 41 30 0 0 0.829 0.279 0.159 0.116 0.000 0.000 chr22 21637302 21649299
view SDF2 198 67 57 36 0 0 0.767 0.260 0.221 0.140 0.000 0.000 chr17 28643346 28666906
view SDF4 199 63 49 32 0 0 0.771 0.244 0.190 0.124 0.000 0.000 chr1 1211931 1237001
view SDHAF1 195 61 57 39 0 0 0.756 0.236 0.221 0.151 0.000 0.000 chr19 35990188 36001312
view SDHAF2 118 18 130 79 1 0 0.457 0.070 0.504 0.306 0.004 0.000 chr11 61425124 61451733
view SDHAF3 200 69 51 29 0 0 0.775 0.267 0.198 0.112 0.000 0.000 chr7 97112698 97186763
view SDHAF4 184 60 67 39 0 0 0.713 0.233 0.260 0.151 0.000 0.000 chr6 70561930 70594569
view SDHA 132 57 95 35 0 0 0.512 0.221 0.368 0.136 0.000 0.000 chr5 213320 262082
view SDHB 183 61 65 39 0 0 0.709 0.236 0.252 0.151 0.000 0.000 chr1 17013722 17059032
view SDHC 164 50 77 44 0 0 0.636 0.194 0.298 0.171 0.000 0.000 chr1 161309381 161368206
view SDHD 193 62 58 39 1 1 0.748 0.240 0.225 0.151 0.004 0.004 chr11 112081873 112100794
view SDK1 58 0 98 60 0 0 0.225 0.000 0.380 0.233 0.000 0.000 chr7 3296252 4274000
view SDK2 101 13 69 42 0 0 0.391 0.050 0.267 0.163 0.000 0.000 chr17 73329384 73649445
view SDR16C5 198 64 57 39 0 0 0.767 0.248 0.221 0.151 0.000 0.000 chr8 56295005 56325175
view SDR39U1 230 94 28 11 0 0 0.891 0.364 0.109 0.043 0.000 0.000 chr14 24434766 24447776
view SDR42E1 209 68 46 34 0 0 0.810 0.264 0.178 0.132 0.000 0.000 chr16 81983855 82016470
view SDR42E2 177 57 66 37 0 0 0.686 0.221 0.256 0.143 0.000 0.000 chr16 22157506 22196751
view SDR9C7 214 81 41 22 0 0 0.829 0.314 0.159 0.085 0.000 0.000 chr12 56918133 56939408
view SDSL 148 39 103 60 0 0 0.574 0.151 0.399 0.233 0.000 0.000 chr12 113417380 113443276
view SDS 171 48 78 48 0 0 0.663 0.186 0.302 0.186 0.000 0.000 chr12 113387445 113408887
view SEBOX 192 55 62 47 1 0 0.744 0.213 0.240 0.182 0.004 0.000 chr17 28358506 28370199
view SEC11A 159 41 84 52 0 0 0.616 0.159 0.326 0.202 0.000 0.000 chr15 84664544 84721139
view SEC11C 221 85 33 17 0 0 0.857 0.329 0.128 0.066 0.000 0.000 chr18 59134884 59163832
view SEC13 189 56 58 39 0 0 0.733 0.217 0.225 0.151 0.000 0.000 chr3 10295931 10326112
view SEC14L1 214 79 38 21 0 0 0.829 0.306 0.147 0.081 0.000 0.000 chr17 77135969 77222101