Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SATL1 54 15 183 77 0 0 0.209 0.058 0.709 0.298 0.000 0.000 chrX 85087284 85248779
view SAV1 194 61 52 35 0 0 0.752 0.236 0.202 0.136 0.000 0.000 chr14 50628580 50673306
view SAXO1 181 60 50 27 0 0 0.702 0.233 0.194 0.105 0.000 0.000 chr9 18922650 19038209
view SAXO2 202 77 47 20 1 0 0.783 0.298 0.182 0.078 0.004 0.000 chr15 82257818 82289927
view SAYSD1 229 84 28 20 0 0 0.888 0.326 0.109 0.078 0.000 0.000 chr6 39099063 39120186
view SBDS 218 77 36 25 1 0 0.845 0.298 0.140 0.097 0.004 0.000 chr7 66982680 67000586
view SBF1 200 65 46 31 0 0 0.775 0.252 0.178 0.120 0.000 0.000 chr22 50440000 50480035
view SBF2 111 25 91 53 0 0 0.430 0.097 0.353 0.205 0.000 0.000 chr11 9773668 10299219
view SBK1 191 64 58 33 0 0 0.740 0.248 0.225 0.128 0.000 0.000 chr16 28287525 28328849
view SBK2 216 73 39 29 1 1 0.837 0.283 0.151 0.112 0.004 0.004 chr19 55523611 55542133
view SBK3 218 74 33 24 0 0 0.845 0.287 0.128 0.093 0.000 0.000 chr19 55535656 55550543
view SBNO1 129 32 104 59 0 0 0.500 0.124 0.403 0.229 0.000 0.000 chr12 123284109 123369847
view SBNO2 101 13 87 42 0 0 0.391 0.050 0.337 0.163 0.000 0.000 chr19 1102638 1179268
view SBSN 224 79 32 24 0 0 0.868 0.306 0.124 0.093 0.000 0.000 chr19 35518367 35533311
view SBSPON 206 65 40 29 0 0 0.798 0.252 0.155 0.112 0.000 0.000 chr8 73059543 73098172
view SC5D 211 82 41 19 0 0 0.818 0.318 0.159 0.074 0.000 0.000 chr11 121287771 121318410
view SCAF11 171 54 70 39 0 0 0.663 0.209 0.271 0.151 0.000 0.000 chr12 45914131 45995574
view SCAF1 190 58 60 43 0 0 0.736 0.225 0.233 0.167 0.000 0.000 chr19 49637209 49663642
view SCAF4 175 59 59 35 0 0 0.678 0.229 0.229 0.136 0.000 0.000 chr21 31666000 31737118
view SCAF8 140 27 87 56 0 0 0.543 0.105 0.337 0.217 0.000 0.000 chr6 154728416 154839221
view SCAI 152 50 89 43 0 0 0.589 0.194 0.345 0.167 0.000 0.000 chr9 124937608 125148528
view SCAMP1 166 53 80 46 0 0 0.643 0.205 0.310 0.178 0.000 0.000 chr5 78355617 78485739
view SCAMP2 192 69 51 26 0 0 0.744 0.267 0.198 0.101 0.000 0.000 chr15 74838730 74878365
view SCAMP3 187 61 66 42 0 0 0.725 0.236 0.256 0.163 0.000 0.000 chr1 155250981 155267360
view SCAMP4 220 74 29 23 1 1 0.853 0.287 0.112 0.089 0.004 0.004 chr19 1900399 1931013
view SCAMP5 184 60 63 38 0 0 0.713 0.233 0.244 0.147 0.000 0.000 chr15 74990563 75026495
view SCAND1 186 59 70 45 1 0 0.721 0.229 0.271 0.174 0.004 0.000 chr20 35948624 35959502
view SCAND3 215 82 39 20 0 0 0.833 0.318 0.151 0.078 0.000 0.000 chr6 28565535 28592298
view SCAPER 155 48 76 42 0 0 0.601 0.186 0.295 0.163 0.000 0.000 chr15 76342904 76910340
view SCAP 151 43 83 50 0 0 0.585 0.167 0.322 0.194 0.000 0.000 chr3 47408681 47480941
view SCARA3 203 74 41 24 0 0 0.787 0.287 0.159 0.093 0.000 0.000 chr8 27628902 27678018
view SCARA5 156 44 58 36 0 0 0.605 0.171 0.225 0.140 0.000 0.000 chr8 27864883 27997673
view SCARB1 177 50 48 34 0 0 0.686 0.194 0.186 0.132 0.000 0.000 chr12 124771856 124868864
view SCARB2 191 67 55 30 0 0 0.740 0.260 0.213 0.116 0.000 0.000 chr4 76153737 76218824
view SCARF1 200 67 49 30 0 0 0.775 0.260 0.190 0.116 0.000 0.000 chr17 1628858 1650732
view SCARF2 200 65 55 37 0 0 0.775 0.252 0.213 0.143 0.000 0.000 chr22 20419584 20442825
view SCART1 216 74 33 23 2 1 0.837 0.287 0.128 0.089 0.008 0.004 chr10 133448945 133474760
view SCCPDH 204 76 43 22 0 0 0.791 0.295 0.167 0.085 0.000 0.000 chr1 246719409 246773137
view SCD5 104 26 99 54 0 0 0.403 0.101 0.384 0.209 0.000 0.000 chr4 82624539 82803796
view SCD 209 76 44 26 0 0 0.810 0.295 0.171 0.101 0.000 0.000 chr10 100342233 100369826
view SCEL 177 65 65 31 0 0 0.686 0.252 0.252 0.120 0.000 0.000 chr13 77530706 77650263
view SCFD1 163 58 71 36 0 0 0.632 0.225 0.275 0.140 0.000 0.000 chr14 30617319 30740850
view SCFD2 81 17 87 43 0 0 0.314 0.066 0.337 0.167 0.000 0.000 chr4 52867982 53371061
view SCG2 196 69 61 36 1 0 0.760 0.267 0.236 0.140 0.004 0.000 chr2 223591940 223607361
view SCG3 200 73 46 26 0 0 0.775 0.283 0.178 0.101 0.000 0.000 chr15 51676503 51726026
view SCG5 207 69 36 25 0 0 0.802 0.267 0.140 0.097 0.000 0.000 chr15 32636710 32702092
view SCGB1A1 223 80 33 23 0 0 0.864 0.310 0.128 0.089 0.000 0.000 chr11 62414033 62428195
view SCGB1C1 177 53 73 45 1 1 0.686 0.205 0.283 0.174 0.004 0.004 chr11 188078 199575
view SCGB1C2 201 66 50 32 0 0 0.779 0.256 0.194 0.124 0.000 0.000 chr17 132569 144067
view SCGB1D1 211 77 43 25 2 1 0.818 0.298 0.167 0.097 0.008 0.004 chr11 62185216 62198539