Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view RWDD3 214 81 37 21 0 0 0.829 0.314 0.143 0.081 0.000 0.000 chr1 95229210 95252225
view RWDD4 239 90 16 13 0 0 0.926 0.349 0.062 0.050 0.000 0.000 chr4 183634635 183664185
view RXFP1 104 19 115 71 0 0 0.403 0.074 0.446 0.275 0.000 0.000 chr4 158516882 158658372
view RXFP2 192 77 52 22 0 0 0.744 0.298 0.202 0.085 0.000 0.000 chr13 31734526 31808389
view RXFP3 222 87 32 16 2 0 0.860 0.337 0.124 0.062 0.008 0.000 chr5 33931386 33943918
view RXFP4 155 50 100 52 0 0 0.601 0.194 0.388 0.202 0.000 0.000 chr1 155936638 155948087
view RXRA 115 20 92 55 0 0 0.446 0.078 0.357 0.213 0.000 0.000 chr9 134321455 134445585
view RXRB 195 62 57 39 0 0 0.756 0.240 0.221 0.151 0.000 0.000 chr6 33188588 33205665
view RXRG 205 72 45 29 0 0 0.795 0.279 0.174 0.112 0.000 0.000 chr1 165395922 165450126
view RXYLT1 185 73 66 30 0 0 0.717 0.283 0.256 0.116 0.000 0.000 chr12 63774909 63814562
view RYK 187 67 65 34 0 0 0.725 0.260 0.252 0.132 0.000 0.000 chr3 134152133 134255859
view RYR1 108 21 95 55 0 0 0.419 0.081 0.368 0.213 0.000 0.000 chr19 38428691 38592564
view RYR2 50 3 84 44 0 0 0.194 0.012 0.326 0.171 0.000 0.000 chr1 237037184 237838988
view RYR3 76 12 70 38 0 0 0.295 0.047 0.271 0.147 0.000 0.000 chr15 33305967 33871102
view S100A10 194 68 59 33 0 0 0.752 0.264 0.229 0.128 0.000 0.000 chr1 151977915 151998859
view S100A11 180 48 70 49 0 0 0.698 0.186 0.271 0.190 0.000 0.000 chr1 152027506 152042004
view S100A12 182 59 74 45 1 0 0.705 0.229 0.287 0.174 0.004 0.000 chr1 153368711 153380621
view S100A13 186 55 67 45 0 0 0.721 0.213 0.260 0.174 0.000 0.000 chr1 153613799 153632505
view S100A14 196 62 59 40 0 0 0.760 0.240 0.229 0.155 0.000 0.000 chr1 153609255 153621325
view S100A16 199 64 56 39 0 0 0.771 0.248 0.217 0.151 0.000 0.000 chr1 153601886 153618137
view S100A1 188 57 66 46 1 0 0.729 0.221 0.256 0.178 0.004 0.000 chr1 153623434 153637039
view S100A2 184 49 64 48 1 0 0.713 0.190 0.248 0.186 0.004 0.000 chr1 153556108 153570844
view S100A3 152 37 102 65 1 0 0.589 0.143 0.395 0.252 0.004 0.000 chr1 153542329 153554258
view S100A4 174 54 79 48 1 0 0.674 0.209 0.306 0.186 0.004 0.000 chr1 153538621 153550806
view S100A5 188 58 69 47 0 0 0.729 0.225 0.267 0.182 0.000 0.000 chr1 153532147 153545934
view S100A6 189 60 65 43 0 0 0.733 0.233 0.252 0.167 0.000 0.000 chr1 153529599 153540991
view S100A7A 210 71 43 30 1 1 0.814 0.275 0.167 0.116 0.004 0.004 chr1 153411520 153428222
view S100A7 209 79 42 21 2 1 0.810 0.306 0.163 0.081 0.008 0.004 chr1 153452744 153465651
view S100A8 160 37 92 64 0 0 0.620 0.143 0.357 0.248 0.000 0.000 chr1 153385032 153396073
view S100A9 230 81 25 22 1 0 0.891 0.314 0.097 0.085 0.004 0.000 chr1 153352854 153366023
view S100B 225 84 31 19 1 1 0.872 0.326 0.120 0.074 0.004 0.004 chr21 46593604 46610082
view S100G 111 37 142 63 0 0 0.430 0.143 0.550 0.244 0.000 0.000 chrX 16645158 16659670
view S100PBP 169 46 67 40 0 0 0.655 0.178 0.260 0.155 0.000 0.000 chr1 32812653 32863875
view S100P 240 90 16 13 0 0 0.930 0.349 0.062 0.050 0.000 0.000 chr4 6688878 6702170
view S100Z 173 57 61 36 0 0 0.671 0.221 0.236 0.140 0.000 0.000 chr5 76845014 76926650
view S1PR1 227 85 28 18 0 0 0.880 0.329 0.109 0.070 0.000 0.000 chr1 101232019 101246518
view S1PR2 199 73 47 27 7 0 0.771 0.283 0.182 0.105 0.027 0.000 chr19 10216433 10236331
view S1PR3 200 58 54 44 0 0 0.775 0.225 0.209 0.171 0.000 0.000 chr9 88986468 89010155
view S1PR4 208 68 46 33 0 0 0.806 0.264 0.178 0.128 0.000 0.000 chr19 3173769 3185332
view S1PR5 222 81 33 21 0 0 0.860 0.314 0.128 0.081 0.000 0.000 chr19 10507742 10522447
view SAA1 220 82 38 23 0 0 0.853 0.318 0.147 0.089 0.000 0.000 chr11 18261264 18274967
view SAA2 236 90 21 14 0 0 0.915 0.349 0.081 0.054 0.000 0.000 chr11 18240240 18253668
view SAA4 208 70 46 33 1 1 0.806 0.271 0.178 0.128 0.004 0.004 chr11 18226355 18241802
view SAAL1 141 35 109 63 0 0 0.547 0.136 0.422 0.244 0.000 0.000 chr11 18075292 18111082
view SAC3D1 175 49 77 50 1 1 0.678 0.190 0.298 0.194 0.004 0.004 chr11 65036210 65049828
view SACM1L 176 58 75 41 0 0 0.682 0.225 0.291 0.159 0.000 0.000 chr3 45684396 45750409
view SACS 188 62 46 30 0 0 0.729 0.240 0.178 0.116 0.000 0.000 chr13 23323830 23438702
view SAE1 189 66 50 28 0 0 0.733 0.256 0.194 0.109 0.000 0.000 chr19 47125835 47215636
view SAFB2 174 48 69 47 0 0 0.674 0.186 0.267 0.182 0.000 0.000 chr19 5581999 5627776
view SAFB 140 32 98 61 0 0 0.543 0.124 0.380 0.236 0.000 0.000 chr19 5618083 5673478