Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
Chr Start End
view TMPRSS11B 189 59 65 42 0 0 0.733 0.229 0.252 0.163 0.000 0.000 chr4 68221653 68250694
view TMPRSS11D 169 52 64 37 0 0 0.655 0.202 0.248 0.143 0.000 0.000 chr4 67815876 67889002
view TMPRSS11E 159 38 79 54 0 0 0.616 0.147 0.306 0.209 0.000 0.000 chr4 68442463 68502604
view TMPRSS11F 173 55 74 45 0 0 0.671 0.213 0.287 0.174 0.000 0.000 chr4 68048198 68134869
view TMPRSS12 194 69 59 34 0 0 0.752 0.267 0.229 0.132 0.000 0.000 chr12 50837926 50892884
view TMPRSS13 230 85 20 13 0 0 0.891 0.329 0.078 0.050 0.000 0.000 chr11 117895641 117934402
view TMPRSS15 156 45 57 34 0 0 0.605 0.174 0.221 0.132 0.000 0.000 chr21 18264116 18408785
view TMPRSS2 190 55 53 37 0 0 0.736 0.213 0.205 0.143 0.000 0.000 chr21 41459305 41513158
view TMPRSS3 235 84 15 15 0 0 0.911 0.326 0.058 0.058 0.000 0.000 chr21 42366890 42401052
view TMPRSS4 202 63 45 36 0 0 0.783 0.244 0.174 0.140 0.000 0.000 chr11 118072078 118126890
view TMPRSS5 212 78 42 24 0 0 0.822 0.302 0.163 0.093 0.000 0.000 chr11 113682550 113711308
view TMPRSS6 173 46 67 46 0 0 0.671 0.178 0.260 0.178 0.000 0.000 chr22 37060436 37114713
view TMPRSS7 209 70 36 27 0 0 0.810 0.271 0.140 0.105 0.000 0.000 chr3 112029736 112086269
view TMPRSS9 56 7 93 29 0 0 0.217 0.027 0.360 0.112 0.000 0.000 chr19 2355265 2431261
view TMSB10 177 47 74 52 1 1 0.686 0.182 0.287 0.202 0.004 0.004 chr2 84900656 84911671
view TMSB15A 79 21 178 83 0 0 0.306 0.081 0.690 0.322 0.000 0.000 chrX 102508682 102521739
view TMSB15B 75 18 160 70 1 0 0.291 0.070 0.620 0.271 0.004 0.000 chrX 103957627 103970976
view TMSB15C 17 4 114 42 0 0 0.066 0.016 0.442 0.163 0.000 0.000 chrX 104067887 104081236
view TMSB4X 89 26 167 78 1 0 0.345 0.101 0.647 0.302 0.004 0.000 chrX 12970110 12982223
view TMSB4Y 0 0 131 57 0 0 0.000 0.000 0.508 0.221 0.000 0.000 chrY 13698899 13711024
view TMT1A 222 84 30 16 1 1 0.860 0.326 0.116 0.062 0.004 0.004 chr12 50920015 50937508
view TMT1B 224 78 31 24 0 0 0.868 0.302 0.120 0.093 0.000 0.000 chr12 55676736 55689611
view TMTC1 137 41 62 34 0 0 0.531 0.159 0.240 0.132 0.000 0.000 chr12 29495840 29788942
view TMTC2 47 2 115 62 0 0 0.182 0.008 0.446 0.240 0.000 0.000 chr12 82681906 83139866
view TMTC3 120 32 107 57 0 0 0.465 0.124 0.415 0.221 0.000 0.000 chr12 88137307 88204887
view TMTC4 172 48 62 40 0 0 0.667 0.186 0.240 0.155 0.000 0.000 chr13 100598625 100679795
view TMUB1 201 71 52 29 0 0 0.779 0.275 0.202 0.112 0.000 0.000 chr7 151076085 151088493
view TMUB2 179 54 70 44 0 0 0.694 0.209 0.271 0.171 0.000 0.000 chr17 44181972 44196929
view TMX1 212 75 41 27 1 1 0.822 0.291 0.159 0.105 0.004 0.004 chr14 51235247 51262655
view TMX2 172 49 74 46 0 0 0.667 0.190 0.287 0.178 0.000 0.000 chr11 57707593 57745973
view TMX3 158 47 83 45 0 0 0.612 0.182 0.322 0.174 0.000 0.000 chr18 68668688 68720108
view TMX4 172 55 77 45 0 0 0.667 0.213 0.298 0.174 0.000 0.000 chr20 7972346 8024761
view TNC 182 58 55 35 0 0 0.705 0.225 0.213 0.136 0.000 0.000 chr9 115014575 115123157
view TNFAIP1 169 45 87 59 0 0 0.655 0.174 0.337 0.229 0.000 0.000 chr17 28330761 28352009
view TNFAIP2 200 65 45 32 0 0 0.775 0.252 0.174 0.124 0.000 0.000 chr14 103118461 103142439
view TNFAIP3 179 54 71 47 0 0 0.694 0.209 0.275 0.182 0.000 0.000 chr6 137862259 137888312
view TNFAIP6 207 75 44 26 0 0 0.802 0.291 0.171 0.101 0.000 0.000 chr2 151352592 151385046
view TNFAIP8L1 207 68 43 29 0 0 0.802 0.264 0.167 0.112 0.000 0.000 chr19 4634516 4660568
view TNFAIP8L2 173 48 79 53 1 0 0.671 0.186 0.306 0.205 0.004 0.000 chr1 151151649 151164749
view TNFAIP8L3 196 68 54 32 0 0 0.760 0.264 0.209 0.124 0.000 0.000 chr15 51051601 51099906
view TNFAIP8 191 63 58 37 0 0 0.740 0.244 0.225 0.143 0.000 0.000 chr5 119351019 119404688
view TNFRSF10A 178 51 61 38 0 0 0.690 0.198 0.236 0.147 0.000 0.000 chr8 23185452 23230102
view TNFRSF10B 191 66 46 25 0 0 0.740 0.256 0.178 0.097 0.000 0.000 chr8 23015133 23074031
view TNFRSF10C 226 88 29 16 0 0 0.876 0.341 0.112 0.062 0.000 0.000 chr8 23097921 23122445
view TNFRSF10D 221 74 29 23 0 0 0.857 0.287 0.112 0.089 0.000 0.000 chr8 23130588 23169027
view TNFRSF11A 195 67 49 31 0 0 0.756 0.260 0.190 0.120 0.000 0.000 chr18 62320310 62396288
view TNFRSF11B 213 84 40 18 1 1 0.826 0.326 0.155 0.070 0.004 0.004 chr8 118918557 118956885
view TNFRSF12A 206 66 46 33 0 0 0.798 0.256 0.178 0.128 0.000 0.000 chr16 3015368 3027383
view TNFRSF13B 201 71 46 28 1 1 0.779 0.275 0.178 0.109 0.004 0.004 chr17 16934081 16977118
view TNFRSF13C 156 39 95 61 0 0 0.605 0.151 0.368 0.236 0.000 0.000 chr22 41917032 41931806