Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TP53AIP1 232 85 24 19 1 0 0.899 0.329 0.093 0.074 0.004 0.000 chr11 128930370 128947871
view TP53BP1 150 52 93 45 0 0 0.581 0.202 0.360 0.174 0.000 0.000 chr15 43398061 43498156
view TP53BP2 189 73 55 26 0 0 0.733 0.283 0.213 0.101 0.000 0.000 chr1 223774893 223850947
view TP53I11 210 69 44 33 1 1 0.814 0.267 0.171 0.128 0.004 0.004 chr11 44927348 44955883
view TP53I13 203 61 49 40 2 1 0.787 0.236 0.190 0.155 0.008 0.004 chr17 29563701 29578157
view TP53I3 173 50 78 49 0 0 0.671 0.194 0.302 0.190 0.000 0.000 chr2 24072433 24089834
view TP53INP1 179 55 74 49 0 0 0.694 0.213 0.287 0.190 0.000 0.000 chr8 94920972 94954378
view TP53INP2 201 70 56 34 0 0 0.779 0.271 0.217 0.132 0.000 0.000 chr20 34699344 34718436
view TP53RK 202 71 55 33 1 1 0.783 0.275 0.213 0.128 0.004 0.004 chr20 46679365 46694444
view TP53TG3B 23 7 106 33 3 0 0.089 0.027 0.411 0.128 0.012 0.000 chr16 33355841 33368478
view TP53TG3C 6 0 71 13 0 0 0.023 0.000 0.275 0.050 0.000 0.000 chr16 33189226 33201858
view TP53TG3D 95 37 24 17 137 49 0.368 0.143 0.093 0.066 0.531 0.190 chr16 32248286 32260928
view TP53TG3E 21 2 87 16 4 0 0.081 0.008 0.337 0.062 0.016 0.000 chr16 33299306 33311945
view TP53TG3F 18 5 101 38 5 0 0.070 0.019 0.391 0.147 0.019 0.000 chr16 33454612 33467249
view TP53TG3 129 47 103 53 18 0 0.500 0.182 0.399 0.205 0.070 0.000 chr16 32668530 32681165
view TP53TG5 195 71 60 33 1 0 0.756 0.275 0.233 0.128 0.004 0.000 chr20 45367557 45383325
view TP53 180 49 71 49 0 0 0.698 0.190 0.275 0.190 0.000 0.000 chr17 7663421 7692490
view TP63 155 40 53 37 0 0 0.601 0.155 0.205 0.143 0.000 0.000 chr3 189626389 189902276
view TP63 198 62 28 22 0 0 0.767 0.240 0.109 0.085 0.000 0.000 chr3 189784659 189902276
view TP73 178 46 58 41 0 0 0.690 0.178 0.225 0.159 0.000 0.000 chr1 3647516 3741201
view TPBGL 188 62 69 42 0 0 0.729 0.240 0.267 0.163 0.000 0.000 chr11 75235774 75248704
view TPBG 215 80 41 23 0 0 0.833 0.310 0.159 0.089 0.000 0.000 chr6 82358817 82372420
view TPCN1 124 46 107 50 0 0 0.481 0.178 0.415 0.194 0.000 0.000 chr12 113216464 113303585
view TPCN2 201 62 47 34 0 0 0.779 0.240 0.182 0.132 0.000 0.000 chr11 69043932 69095597
view TPD52L1 159 54 74 40 0 0 0.616 0.209 0.287 0.155 0.000 0.000 chr6 125148773 125269407
view TPD52L2 183 57 58 36 0 0 0.709 0.221 0.225 0.140 0.000 0.000 chr20 63860270 63896538
view TPD52L3 197 65 58 38 2 1 0.764 0.252 0.225 0.147 0.008 0.004 chr9 6323375 6336891
view TPD52 113 22 92 58 0 0 0.438 0.085 0.357 0.225 0.000 0.000 chr8 80029745 80176564
view TPGS1 171 46 67 42 0 0 0.663 0.178 0.260 0.163 0.000 0.000 chr19 502497 524654
view TPGS2 167 51 75 42 0 0 0.647 0.198 0.291 0.163 0.000 0.000 chr18 36789108 36834002
view TPH1 198 71 54 30 0 0 0.767 0.275 0.209 0.116 0.000 0.000 chr11 18012555 18051269
view TPH2 166 47 70 47 0 0 0.643 0.182 0.271 0.182 0.000 0.000 chr12 71933845 72037440
view TPI1 192 60 63 43 0 0 0.744 0.233 0.244 0.167 0.000 0.000 chr12 6862531 6875948
view TPK1 58 0 123 77 0 0 0.225 0.000 0.477 0.298 0.000 0.000 chr7 144446941 144841053
view TPM1 199 64 50 36 0 0 0.771 0.248 0.194 0.140 0.000 0.000 chr15 63037747 63071178
view TPM2 217 76 40 28 0 0 0.841 0.295 0.155 0.109 0.000 0.000 chr9 35677932 35694925
view TPM3 185 59 62 38 0 0 0.717 0.229 0.240 0.147 0.000 0.000 chr1 154156813 154197100
view TPM4 188 56 51 36 0 0 0.729 0.217 0.198 0.140 0.000 0.000 chr19 16071495 16108002
view TPMT 218 81 32 17 0 0 0.845 0.314 0.124 0.066 0.000 0.000 chr6 18123311 18160077
view TPO 64 9 121 53 0 0 0.248 0.035 0.469 0.205 0.000 0.000 chr2 1408463 1548673
view TPP1 217 76 40 29 0 0 0.841 0.295 0.155 0.112 0.000 0.000 chr11 6607768 6624422
view TPP2 182 69 60 28 0 0 0.705 0.267 0.233 0.109 0.000 0.000 chr13 102591986 102684958
view TPPP2 240 91 17 13 1 1 0.930 0.353 0.066 0.050 0.004 0.004 chr14 21025217 21037815
view TPPP3 149 35 105 67 1 0 0.578 0.136 0.407 0.260 0.004 0.000 chr16 67384809 67398498
view TPPP 204 64 47 34 0 0 0.791 0.248 0.182 0.132 0.000 0.000 chr5 654862 698352
view TPRA1 212 70 39 29 0 0 0.822 0.271 0.151 0.112 0.000 0.000 chr3 127566232 127595733
view TPRG1L 201 59 54 43 0 0 0.779 0.229 0.209 0.167 0.000 0.000 chr1 3620015 3635127
view TPRG1 143 38 63 39 0 0 0.554 0.147 0.244 0.151 0.000 0.000 chr3 189166971 189330304
view TPRKB 213 70 40 30 0 0 0.826 0.271 0.155 0.116 0.000 0.000 chr2 73724873 73742345
view TPRN 185 54 59 39 1 0 0.717 0.209 0.229 0.151 0.004 0.000 chr9 137186619 137205741