Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TNRC6A 175 64 73 33 0 0 0.678 0.248 0.283 0.128 0.000 0.000 chr16 24724651 24831218
view TNRC6B 153 53 79 39 0 0 0.593 0.205 0.306 0.151 0.000 0.000 chr22 40172925 40340808
view TNRC6C 137 42 87 46 0 0 0.531 0.163 0.337 0.178 0.000 0.000 chr17 77953703 78113822
view TNR 65 7 118 60 0 0 0.252 0.027 0.457 0.233 0.000 0.000 chr1 175310194 175748595
view TNS1 121 27 69 36 0 0 0.469 0.105 0.267 0.140 0.000 0.000 chr2 217794791 218007995
view TNS2 202 67 54 36 0 0 0.783 0.260 0.209 0.140 0.000 0.000 chr12 53045065 53069379
view TNS3 97 15 91 57 0 0 0.376 0.058 0.353 0.221 0.000 0.000 chr7 47270154 47587111
view TNS4 195 54 47 35 0 0 0.756 0.209 0.182 0.136 0.000 0.000 chr17 40470834 40506623
view TNXB 200 69 44 29 0 0 0.775 0.267 0.171 0.112 0.000 0.000 chr6 32036153 32114338
view TOB1 209 76 45 26 0 0 0.810 0.295 0.174 0.101 0.000 0.000 chr17 50857223 50871354
view TOB2 179 61 69 36 0 0 0.694 0.236 0.267 0.140 0.000 0.000 chr22 41428494 41451801
view TOE1 203 74 52 28 0 0 0.787 0.287 0.202 0.109 0.000 0.000 chr1 45335170 45348973
view TOGARAM1 88 23 140 72 0 0 0.341 0.089 0.543 0.279 0.000 0.000 chr14 44957190 45079431
view TOGARAM2 170 55 62 35 0 0 0.659 0.213 0.240 0.136 0.000 0.000 chr2 28976298 29057230
view TOLLIP 173 43 64 41 0 0 0.671 0.167 0.248 0.159 0.000 0.000 chr11 1269371 1314632
view TOM1L1 195 71 48 25 0 0 0.756 0.275 0.186 0.097 0.000 0.000 chr17 54895852 54966956
view TOM1L2 119 26 97 62 0 0 0.461 0.101 0.376 0.240 0.000 0.000 chr17 17838511 17977400
view TOM1 178 58 58 29 0 0 0.690 0.225 0.225 0.112 0.000 0.000 chr22 35294894 35352973
view TOMM20L 180 61 70 38 0 0 0.698 0.236 0.271 0.147 0.000 0.000 chr14 58390930 58413702
view TOMM20 198 67 56 34 0 0 0.767 0.260 0.217 0.132 0.000 0.000 chr1 235104341 235133837
view TOMM22 191 73 62 27 0 0 0.740 0.283 0.240 0.105 0.000 0.000 chr22 38676957 38690421
view TOMM34 206 68 37 29 0 0 0.798 0.264 0.143 0.112 0.000 0.000 chr20 44937130 44965397
view TOMM40L 222 84 32 18 2 1 0.860 0.326 0.124 0.070 0.008 0.004 chr1 161221060 161235746
view TOMM40 205 62 47 37 0 0 0.795 0.240 0.182 0.143 0.000 0.000 chr19 44886254 44908689
view TOMM5 177 47 80 57 1 1 0.686 0.182 0.310 0.221 0.004 0.004 chr9 37583413 37597597
view TOMM6 224 80 30 21 0 0 0.868 0.310 0.116 0.081 0.000 0.000 chr6 41782694 41794895
view TOMM70 198 73 51 28 1 1 0.767 0.283 0.198 0.109 0.004 0.004 chr3 100358431 100406089
view TOMM7 210 75 46 29 1 0 0.814 0.291 0.178 0.112 0.004 0.000 chr7 22807974 22827849
view TOMT 200 68 54 35 2 0 0.775 0.264 0.209 0.136 0.008 0.000 chr11 72100924 72114596
view TONSL 203 69 46 28 0 0 0.787 0.267 0.178 0.109 0.000 0.000 chr8 144423775 144449440
view TOP1MT 214 71 34 25 0 0 0.829 0.275 0.132 0.097 0.000 0.000 chr8 143304324 143339880
view TOP1 189 70 54 26 0 0 0.733 0.271 0.209 0.101 0.000 0.000 chr20 41023822 41129487
view TOP2A 128 34 116 68 0 0 0.496 0.132 0.450 0.264 0.000 0.000 chr17 40383525 40422896
view TOP2B 154 55 86 42 0 0 0.597 0.213 0.333 0.163 0.000 0.000 chr3 25592984 25669907
view TOP3A 193 65 58 36 0 0 0.748 0.252 0.225 0.140 0.000 0.000 chr17 18266428 18319994
view TOP3B 174 48 74 49 0 0 0.674 0.186 0.287 0.190 0.000 0.000 chr22 21952025 21987787
view TOPAZ1 128 19 110 74 0 0 0.496 0.074 0.426 0.287 0.000 0.000 chr3 44236886 44337098
view TOPBP1 169 53 79 44 0 0 0.655 0.205 0.306 0.171 0.000 0.000 chr3 133595238 133666941
view TOPORS 187 60 68 43 0 0 0.725 0.233 0.264 0.167 0.000 0.000 chr9 32535544 32557586
view TOR1AIP1 144 39 101 59 0 0 0.558 0.151 0.391 0.229 0.000 0.000 chr1 179877285 179925076
view TOR1AIP2 139 39 101 59 0 0 0.539 0.151 0.391 0.229 0.000 0.000 chr1 179834976 179882803
view TOR1A 191 63 61 36 0 0 0.740 0.244 0.236 0.140 0.000 0.000 chr9 129807942 129829136
view TOR1B 186 63 69 39 0 0 0.721 0.244 0.267 0.151 0.000 0.000 chr9 129798184 129816281
view TOR2A 180 50 69 48 1 0 0.698 0.194 0.267 0.186 0.004 0.000 chr9 127726524 127740294
view TOR3A 208 75 48 28 1 1 0.806 0.291 0.186 0.109 0.004 0.004 chr1 179077070 179100996
view TOR4A 203 62 48 37 1 0 0.787 0.240 0.186 0.143 0.004 0.000 chr9 137272726 137287641
view TOX2 143 37 58 38 0 0 0.554 0.143 0.225 0.147 0.000 0.000 chr20 43909852 44074616
view TOX3 160 49 57 32 0 0 0.620 0.190 0.221 0.124 0.000 0.000 chr16 52431417 52552143
view TOX4 199 69 49 30 0 0 0.771 0.267 0.190 0.116 0.000 0.000 chr14 21472195 21504170
view TOX 111 27 78 45 0 0 0.430 0.105 0.302 0.174 0.000 0.000 chr8 58800412 59124147