Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TPRX1 204 65 47 34 1 0 0.791 0.252 0.182 0.132 0.004 0.000 chr19 47796232 47809551
view TPRX2 204 67 47 31 0 0 0.791 0.260 0.182 0.120 0.000 0.000 chr19 47854235 47866721
view TPR 203 73 48 28 0 0 0.787 0.283 0.186 0.109 0.000 0.000 chr1 186306652 186380253
view TPSAB1 144 51 88 42 0 0 0.558 0.198 0.341 0.163 0.000 0.000 chr16 1235705 1247554
view TPSB2 171 48 63 38 0 0 0.663 0.186 0.244 0.147 0.000 0.000 chr16 1223336 1235184
view TPSD1 134 27 93 56 1 0 0.519 0.105 0.360 0.217 0.004 0.000 chr16 1251069 1264008
view TPSG1 194 61 53 34 0 0 0.752 0.236 0.205 0.132 0.000 0.000 chr16 1216651 1230268
view TPST1 172 62 66 34 0 0 0.667 0.240 0.256 0.132 0.000 0.000 chr7 66200334 66365443
view TPST2 199 70 42 23 0 0 0.771 0.271 0.163 0.089 0.000 0.000 chr22 26516996 26595132
view TPT1 183 58 71 43 0 0 0.709 0.225 0.275 0.167 0.000 0.000 chr13 45328471 45346183
view TPTE2 110 12 118 75 0 0 0.426 0.047 0.457 0.291 0.000 0.000 chr13 19417877 19566532
view TPTE 104 44 46 24 94 27 0.403 0.171 0.178 0.093 0.364 0.105 chr21 10516583 10610716
view TPX2 134 20 103 71 0 0 0.519 0.078 0.399 0.275 0.000 0.000 chr20 31734290 31806800
view TRA2A 199 71 47 27 0 0 0.771 0.275 0.182 0.105 0.000 0.000 chr7 23499780 23536981
view TRA2B 216 78 41 27 0 0 0.837 0.302 0.159 0.105 0.000 0.000 chr3 185909558 185943014
view TRABD2A 118 21 113 68 0 0 0.457 0.081 0.438 0.264 0.000 0.000 chr2 84816666 84886084
view TRABD2B 121 26 83 47 0 0 0.469 0.101 0.322 0.182 0.000 0.000 chr1 47755528 48002385
view TRABD 214 74 35 25 1 0 0.829 0.287 0.136 0.097 0.004 0.000 chr22 50180913 50204595
view TRADD 138 28 115 73 0 0 0.535 0.109 0.446 0.283 0.000 0.000 chr16 67149185 67164909
view TRAF1 182 63 70 37 0 0 0.705 0.244 0.271 0.143 0.000 0.000 chr9 120897393 120931796
view TRAF2 154 34 80 58 0 0 0.597 0.132 0.310 0.225 0.000 0.000 chr9 136881516 136931607
view TRAF3IP1 168 55 71 36 0 0 0.651 0.213 0.275 0.140 0.000 0.000 chr2 238315518 238405897
view TRAF3IP2 157 44 89 54 0 0 0.609 0.171 0.345 0.209 0.000 0.000 chr6 111550381 111610878
view TRAF3IP3 221 83 30 16 0 0 0.857 0.322 0.116 0.062 0.000 0.000 chr1 209751053 209787310
view TRAF3 147 45 71 43 0 0 0.570 0.174 0.275 0.167 0.000 0.000 chr14 102772449 102916500
view TRAF4 189 69 66 35 1 0 0.733 0.267 0.256 0.136 0.004 0.000 chr17 28739011 28755956
view TRAF5 161 53 81 40 0 0 0.624 0.205 0.314 0.155 0.000 0.000 chr1 211321833 211379946
view TRAF6 193 60 54 37 0 0 0.748 0.233 0.209 0.143 0.000 0.000 chr11 36478769 36515272
view TRAF7 159 33 84 59 0 0 0.616 0.128 0.326 0.229 0.000 0.000 chr16 2150782 2183129
view TRAFD1 172 67 71 29 0 0 0.667 0.260 0.275 0.112 0.000 0.000 chr12 112120560 112158604
view TRAIP 147 39 98 56 0 0 0.570 0.151 0.380 0.217 0.000 0.000 chr3 49823601 49861564
view TRAK1 143 31 63 45 0 0 0.554 0.120 0.244 0.174 0.000 0.000 chr3 42086357 42230890
view TRAK2 185 64 59 35 0 0 0.717 0.248 0.229 0.136 0.000 0.000 chr2 201372207 201456458
view TRAM1L1 217 77 40 27 0 0 0.841 0.298 0.155 0.105 0.000 0.000 chr4 117078554 117090576
view TRAM1 164 55 78 40 0 0 0.636 0.213 0.302 0.155 0.000 0.000 chr8 70568218 70613416
view TRAM2 188 58 52 34 0 0 0.729 0.225 0.202 0.132 0.000 0.000 chr6 52492408 52582060
view TRANK1 164 50 65 40 0 0 0.636 0.194 0.252 0.155 0.000 0.000 chr3 36821819 36950054
view TRAP1 205 70 39 24 0 0 0.795 0.271 0.151 0.093 0.000 0.000 chr16 3653037 3722524
view TRAPPC10 126 22 86 48 0 0 0.488 0.085 0.333 0.186 0.000 0.000 chr21 44007309 44111552
view TRAPPC11 209 79 31 14 0 0 0.810 0.306 0.120 0.054 0.000 0.000 chr4 183654293 183718589
view TRAPPC12 171 47 50 36 0 0 0.663 0.182 0.194 0.140 0.000 0.000 chr2 3374694 3484565
view TRAPPC13 182 57 72 46 0 0 0.705 0.221 0.279 0.178 0.000 0.000 chr5 65620027 65671233
view TRAPPC14 202 73 51 29 2 0 0.783 0.283 0.198 0.112 0.008 0.000 chr7 100149423 100163723
view TRAPPC1 214 75 44 30 0 0 0.829 0.291 0.171 0.116 0.000 0.000 chr17 7925349 7936946
view TRAPPC2B 204 74 52 29 0 0 0.791 0.287 0.202 0.112 0.000 0.000 chr19 57358551 57370405
view TRAPPC2L 224 74 29 26 0 0 0.868 0.287 0.112 0.101 0.000 0.000 chr16 88852127 88867678
view TRAPPC2 99 37 159 68 0 0 0.384 0.143 0.616 0.264 0.000 0.000 chrX 13707245 13739620
view TRAPPC3L 179 66 69 35 0 0 0.694 0.256 0.267 0.136 0.000 0.000 chr6 116489989 116550684
view TRAPPC3 199 78 55 24 0 0 0.771 0.302 0.213 0.093 0.000 0.000 chr1 36131572 36154486
view TRAPPC4 193 55 55 41 2 1 0.748 0.213 0.213 0.159 0.008 0.004 chr11 119013766 119029134